Analysis of interatomic Contacts of Structural Units in PDB entry:
1TPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TPT entry

There is 1 chain in PDB entry 1TPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1TPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
4 12Right-handed alpha
Helix 2
H2
A
18 32Right-handed alpha
Helix 3
H3
A
35 49Right-handed alpha
Helix 4
H4
A
52 65Right-handed alpha
Helix 5
H5
A
94 105Right-handed alpha
Helix 6
H6
A
122 130Right-handed alpha
Helix 7
H7
A
138 149Right-handed alpha
Helix 8
H8
A
163 174Right-handed alpha
Helix 9
H9
A
179 193Right-handed alpha
Helix 10
H10
A
213 229Right-handed alpha
Helix 11
H11
A
252 265Right-handed alpha
Helix 12
H12
A
270 287Right-handed alpha
Helix 13
H13
A
292 306Right-handed alpha
Helix 14
H14
A
308 320Right-handed alpha
Helix 15
H15
A
330 334Right-handed alpha
Helix 16
H16
A
352 367Right-handed alpha
Helix 17
H17
A
407 421Right-handed alpha
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There are 2 sheets in PDB entry 1TPT. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
108 113parallel
Strand 3
A
80 87parallel
Strand 4
A
197 205parallel
Strand 5
A
234 241parallel
Strand 6
A
433 438anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
339 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il