Analysis of interatomic Contacts of Structural Units in PDB entry:
1TPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TPY entry

There is 1 chain in PDB entry 1TPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1TPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
19 25Right-handed alpha
Helix 3
3
A
44 58Right-handed alpha
Helix 4
4
A
76 87Right-handed alpha
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
122 126Right-handed 310
Helix 7
7
A
138 143Right-handed alpha
Helix 8
8
A
146 158Right-handed alpha
Helix 9
9
A
173 180Right-handed alpha
Helix 10
10
A
185 199Right-handed alpha
Helix 11
11
A
207 219Right-handed alpha
Helix 12
12
A
228 246Right-handed alpha
Helix 13
13
A
246 254Right-handed alpha
Helix 14
14
A
255 276Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1TPY.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
89 94parallel
Strand 3
A
67 71parallel
Strand 4
A
132 136parallel
Strand 5
A
163 171parallel
Strand 6
A
278 286anti-parallel
Strand 7
A
221 227anti-parallel
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