Analysis of interatomic Contacts of Structural Units in PDB entry:
1TQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TQ8 entry

There are 6 chains in PDB entry 1TQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13THR 159
B
 SER 13THR 159
C
 SER 13THR 159
D
 SER 13THR 159
E
 SER 13THR 159
F
 SER 13THR 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1TQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 42Right-handed alpha
Helix 2
2
A
78 92Right-handed alpha
Helix 3
3
A
106 118Right-handed alpha
Helix 4
4
A
132 138Right-handed alpha
Helix 5
5
A
140 149Right-handed alpha
Helix 6
6
B
27 42Right-handed alpha
Helix 7
7
B
77 94Right-handed alpha
Helix 8
8
B
106 118Right-handed alpha
Helix 9
9
B
132 138Right-handed alpha
Helix 10
10
B
140 149Right-handed alpha
Helix 11
11
C
27 42Right-handed alpha
Helix 12
12
C
78 92Right-handed alpha
Helix 13
13
C
106 118Right-handed alpha
Helix 14
14
C
132 138Right-handed alpha
Helix 15
15
C
140 149Right-handed alpha
Helix 16
16
D
27 42Right-handed alpha
Helix 17
17
D
78 93Right-handed alpha
Helix 18
18
D
106 118Right-handed alpha
Helix 19
19
D
132 138Right-handed alpha
Helix 20
20
D
140 149Right-handed alpha
Helix 21
21
E
27 42Right-handed alpha
Helix 22
22
E
77 92Right-handed alpha
Helix 23
23
E
106 118Right-handed alpha
Helix 24
24
E
132 138Right-handed alpha
Helix 25
25
E
140 149Right-handed alpha
Helix 26
26
F
27 42Right-handed alpha
Helix 27
27
F
77 93Right-handed alpha
Helix 28
28
F
106 118Right-handed alpha
Helix 29
29
F
132 138Right-handed alpha
Helix 30
30
F
140 149Right-handed alpha
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There are 3 sheets in PDB entry 1TQ8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
46 52parallel
Strand 3
A
19 23parallel
Strand 4
A
122 126parallel
Strand 5
B
152 156parallel
Strand 6
A
152 156anti-parallel
Strand 7
B
122 126parallel
Strand 8
B
19 23parallel
Strand 9
B
46 52parallel
Strand 10
B
97 103parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 103first strand
Strand 2
C
46 52parallel
Strand 3
C
19 23parallel
Strand 4
C
122 126parallel
Strand 5
D
152 156parallel
Strand 6
C
152 156anti-parallel
Strand 7
D
122 126parallel
Strand 8
D
19 23parallel
Strand 9
D
46 52parallel
Strand 10
D
97 103parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
98 103first strand
Strand 2
E
46 52parallel
Strand 3
E
19 23parallel
Strand 4
E
122 126parallel
Strand 5
F
152 156parallel
Strand 6
E
152 156anti-parallel
Strand 7
F
122 126parallel
Strand 8
F
19 23parallel
Strand 9
F
46 52parallel
Strand 10
F
97 103parallel
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