Analysis of interatomic Contacts of Structural Units in PDB entry:
1TQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TQJ entry

There are 6 chains in PDB entry 1TQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 223
B
 LYS 3GLU 224
C
 LYS 3PRO 225
D
 LYS 3PRO 223
E
 LYS 3PRO 223
F
 LYS 3PRO 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 1TQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 14Right-handed 310
Helix 2
2
A
15 17Right-handed 310
Helix 3
3
A
18 29Right-handed alpha
Helix 4
4
A
50 58Right-handed alpha
Helix 5
5
A
59 61Right-handed 310
Helix 6
6
A
73 76Right-handed 310
Helix 7
7
A
77 85Right-handed alpha
Helix 8
8
A
100 111Right-handed alpha
Helix 9
9
A
124 129Right-handed 310
Helix 10
10
A
131 135Right-handed 310
Helix 11
11
A
153 155Right-handed 310
Helix 12
12
A
156 171Right-handed alpha
Helix 13
13
A
187 194Right-handed alpha
Helix 14
14
A
201 206Right-handed alpha
Helix 15
15
A
209 219Right-handed alpha
Helix 16
16
B
11 14Right-handed 310
Helix 17
17
B
15 17Right-handed 310
Helix 18
18
B
18 29Right-handed alpha
Helix 19
19
B
50 58Right-handed alpha
Helix 20
20
B
59 61Right-handed 310
Helix 21
21
B
73 76Right-handed 310
Helix 22
22
B
77 85Right-handed alpha
Helix 23
23
B
100 111Right-handed alpha
Helix 24
24
B
124 129Right-handed 310
Helix 25
25
B
131 135Right-handed 310
Helix 26
26
B
153 155Right-handed 310
Helix 27
27
B
156 171Right-handed alpha
Helix 28
28
B
187 194Right-handed alpha
Helix 29
29
B
201 206Right-handed alpha
Helix 30
30
B
209 219Right-handed alpha
Helix 31
31
C
11 14Right-handed 310
Helix 32
32
C
15 17Right-handed 310
Helix 33
33
C
18 29Right-handed alpha
Helix 34
34
C
50 58Right-handed alpha
Helix 35
35
C
59 61Right-handed 310
Helix 36
36
C
73 76Right-handed 310
Helix 37
37
C
77 85Right-handed alpha
Helix 38
38
C
100 111Right-handed alpha
Helix 39
39
C
124 129Right-handed 310
Helix 40
40
C
131 135Right-handed 310
Helix 41
41
C
155 171Right-handed alpha
Helix 42
42
C
187 194Right-handed alpha
Helix 43
43
C
201 206Right-handed alpha
Helix 44
44
C
209 219Right-handed alpha
Helix 45
45
D
11 14Right-handed 310
Helix 46
46
D
15 17Right-handed 310
Helix 47
47
D
18 29Right-handed alpha
Helix 48
48
D
50 58Right-handed alpha
Helix 49
49
D
59 61Right-handed 310
Helix 50
50
D
73 76Right-handed 310
Helix 51
51
D
77 85Right-handed alpha
Helix 52
52
D
100 111Right-handed alpha
Helix 53
53
D
124 129Right-handed 310
Helix 54
54
D
131 135Right-handed 310
Helix 55
55
D
155 170Right-handed alpha
Helix 56
56
D
187 194Right-handed alpha
Helix 57
57
D
201 206Right-handed alpha
Helix 58
58
D
209 219Right-handed alpha
Helix 59
59
E
11 14Right-handed 310
Helix 60
60
E
15 17Right-handed 310
Helix 61
61
E
18 29Right-handed alpha
Helix 62
62
E
50 58Right-handed alpha
Helix 63
63
E
59 61Right-handed 310
Helix 64
64
E
73 76Right-handed 310
Helix 65
65
E
77 85Right-handed alpha
Helix 66
66
E
100 111Right-handed alpha
Helix 67
67
E
124 129Right-handed 310
Helix 68
68
E
131 135Right-handed 310
Helix 69
69
E
155 171Right-handed alpha
Helix 70
70
E
186 194Right-handed alpha
Helix 71
71
E
201 206Right-handed alpha
Helix 72
72
E
209 219Right-handed alpha
Helix 73
73
F
11 14Right-handed 310
Helix 74
74
F
15 17Right-handed 310
Helix 75
75
F
18 29Right-handed alpha
Helix 76
76
F
50 58Right-handed alpha
Helix 77
77
F
59 61Right-handed 310
Helix 78
78
F
73 76Right-handed 310
Helix 79
79
F
77 85Right-handed alpha
Helix 80
80
F
100 111Right-handed alpha
Helix 81
81
F
124 129Right-handed 310
Helix 82
82
F
131 135Right-handed 310
Helix 83
83
F
153 155Right-handed 310
Helix 84
84
F
156 171Right-handed alpha
Helix 85
85
F
186 194Right-handed alpha
Helix 86
86
F
201 206Right-handed alpha
Helix 87
87
F
209 219Right-handed alpha
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There are 6 sheets in PDB entry 1TQJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
197 200parallel
Strand 3
A
175 179parallel
Strand 4
A
137 141parallel
Strand 5
A
114 119parallel
Strand 6
A
88 92parallel
Strand 7
A
64 70parallel
Strand 8
A
33 39parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
197 200parallel
Strand 3
B
175 179parallel
Strand 4
B
137 141parallel
Strand 5
B
114 119parallel
Strand 6
B
88 92parallel
Strand 7
B
64 70parallel
Strand 8
B
33 39parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
C
197 200parallel
Strand 3
C
175 179parallel
Strand 4
C
137 141parallel
Strand 5
C
114 119parallel
Strand 6
C
88 92parallel
Strand 7
C
64 70parallel
Strand 8
C
33 39parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
D
197 200parallel
Strand 3
D
175 179parallel
Strand 4
D
137 141parallel
Strand 5
D
114 119parallel
Strand 6
D
88 92parallel
Strand 7
D
64 70parallel
Strand 8
D
33 39parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 9first strand
Strand 2
E
197 200parallel
Strand 3
E
175 179parallel
Strand 4
E
137 141parallel
Strand 5
E
114 119parallel
Strand 6
E
88 92parallel
Strand 7
E
64 70parallel
Strand 8
E
33 39parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 9first strand
Strand 2
F
197 200parallel
Strand 3
F
175 179parallel
Strand 4
F
137 141parallel
Strand 5
F
114 119parallel
Strand 6
F
88 92parallel
Strand 7
F
64 70parallel
Strand 8
F
33 39parallel
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