Analysis of interatomic Contacts of Structural Units in PDB entry:
1TQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TQX entry

There are 2 chains in PDB entry 1TQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4TYR 224
B
 LEU 4TYR 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 1TQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 15Right-handed 310
Helix 2
2
A
16 18Right-handed 310
Helix 3
3
A
19 30Right-handed alpha
Helix 4
4
A
51 59Right-handed alpha
Helix 5
5
A
60 62Right-handed 310
Helix 6
6
A
75 83Right-handed 310
Helix 7
7
A
94 97Right-handed 310
Helix 8
8
A
99 112Right-handed alpha
Helix 9
9
A
126 129Right-handed 310
Helix 10
10
A
130 135Right-handed alpha
Helix 11
11
A
157 159Right-handed 310
Helix 12
12
A
160 171Right-handed alpha
Helix 13
13
A
183 193Right-handed alpha
Helix 14
14
A
201 206Right-handed alpha
Helix 15
15
A
209 224Right-handed alpha
Helix 16
16
B
12 15Right-handed 310
Helix 17
17
B
16 18Right-handed 310
Helix 18
18
B
19 30Right-handed alpha
Helix 19
19
B
51 59Right-handed alpha
Helix 20
20
B
60 62Right-handed 310
Helix 21
21
B
75 83Right-handed 310
Helix 22
22
B
94 97Right-handed 310
Helix 23
23
B
99 113Right-handed alpha
Helix 24
24
B
126 129Right-handed 310
Helix 25
25
B
130 135Right-handed alpha
Helix 26
26
B
157 159Right-handed 310
Helix 27
27
B
160 171Right-handed alpha
Helix 28
28
B
183 193Right-handed alpha
Helix 29
29
B
201 206Right-handed alpha
Helix 30
30
B
209 223Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1TQX. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
197 200parallel
Strand 3
A
175 179parallel
Strand 4
A
141 145parallel
Strand 5
A
116 121parallel
Strand 6
A
88 92parallel
Strand 7
A
66 72parallel
Strand 8
A
34 40parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
197 200parallel
Strand 3
B
175 179parallel
Strand 4
B
141 145parallel
Strand 5
B
116 121parallel
Strand 6
B
88 92parallel
Strand 7
B
66 72parallel
Strand 8
B
34 40parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il