Analysis of interatomic Contacts of Structural Units in PDB entry:
1TRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TRN entry

There are 4 chains in PDB entry 1TRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16ASP 150
A
 PRO 152SER 246
B
 ILE 16ASP 150
B
 PRO 152SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1TRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
2
A
165 171Right-handed alpha
Helix 2
3
A
231 245Right-handed 310
Helix 3
5
B
165 171Right-handed alpha
Helix 4
6
B
231 245Right-handed 310
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There are 4 sheets in PDB entry 1TRN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
30 34anti-parallel
Strand 4
A
41 48anti-parallel
Strand 5
A
51 54anti-parallel
Strand 6
A
104 108anti-parallel
Strand 7
A
86 91anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
210 215anti-parallel
Strand 5
A
226 230anti-parallel
Strand 6
A
180 184anti-parallel
Strand 7
A
160 163anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
30 34anti-parallel
Strand 4
B
41 48anti-parallel
Strand 5
B
51 54anti-parallel
Strand 6
B
104 108anti-parallel
Strand 7
B
86 91anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
135 140anti-parallel
Strand 3
B
197 201anti-parallel
Strand 4
B
210 215anti-parallel
Strand 5
B
226 230anti-parallel
Strand 6
B
180 184anti-parallel
Strand 7
B
160 163anti-parallel
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