Analysis of interatomic Contacts of Structural Units in PDB entry:
1TRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TRO entry

There are 8 chains in PDB entry 1TRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 T 1 C 19
J
 T 1 C 19
K
 T 1 C 19
L
 T 1 C 19
A
 SER 5ASP 108
C
 ALA 10ASP 108
E
 ALA 12ASP 108
G
 SER 5LEU 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1TRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1A
A
7 31Right-handed alpha
Helix 2
1B
A
35 42Right-handed alpha
Helix 3
1C
A
46 63Right-handed alpha
Helix 4
1D
A
68 74Right-handed alpha
Helix 5
1E
A
79 91Right-handed alpha
Helix 6
1F
A
94 105Right-handed alpha
Helix 7
2A
C
10 31Right-handed alpha
Helix 8
2B
C
35 42Right-handed alpha
Helix 9
2C
C
46 63Right-handed alpha
Helix 10
2D
C
68 74Right-handed alpha
Helix 11
2E
C
79 91Right-handed alpha
Helix 12
2F
C
94 105Right-handed alpha
Helix 13
3A
E
15 31Right-handed alpha
Helix 14
3B
E
35 42Right-handed alpha
Helix 15
3C
E
46 63Right-handed alpha
Helix 16
3D
E
68 74Right-handed alpha
Helix 17
3E
E
79 91Right-handed alpha
Helix 18
3F
E
94 105Right-handed alpha
Helix 19
4A
G
7 31Right-handed alpha
Helix 20
4B
G
35 42Right-handed alpha
Helix 21
4C
G
46 63Right-handed alpha
Helix 22
4D
G
68 74Right-handed alpha
Helix 23
4E
G
79 91Right-handed alpha
Helix 24
4F
G
94 105Right-handed alpha
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There are no sheets in PDB entry 1TRO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il