Analysis of interatomic Contacts of Structural Units in PDB entry:
1TU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TU5 entry

There are 4 chains in PDB entry 1TU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 57ASN 469
A
 ASP 471ASP 717
B
 GLN 57ASN 469
B
 ASP 471ASP 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1TU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 79Right-handed alpha
Helix 2
2
A
104 115Right-handed alpha
Helix 3
3
A
154 160Right-handed alpha
Helix 4
4
A
166 168Right-handed 310
Helix 5
5
A
171 185Right-handed alpha
Helix 6
6
A
186 189Right-handed 310
Helix 7
7
A
190 199Right-handed alpha
Helix 8
8
A
236 239Right-handed 310
Helix 9
9
A
254 258Right-handed 310
Helix 10
10
A
272 282Right-handed alpha
Helix 11
11
A
375 381Right-handed alpha
Helix 12
12
A
386 388Right-handed 310
Helix 13
13
A
502 505Right-handed 310
Helix 14
14
A
570 573Right-handed 310
Helix 15
15
A
620 627Right-handed 310
Helix 16
16
A
658 663Right-handed 310
Helix 17
17
A
686 690Right-handed 310
Helix 18
18
B
63 78Right-handed alpha
Helix 19
19
B
104 115Right-handed alpha
Helix 20
20
B
154 160Right-handed alpha
Helix 21
21
B
166 168Right-handed 310
Helix 22
22
B
171 185Right-handed alpha
Helix 23
23
B
186 189Right-handed 310
Helix 24
24
B
190 199Right-handed alpha
Helix 25
25
B
236 239Right-handed 310
Helix 26
26
B
254 258Right-handed 310
Helix 27
27
B
272 282Right-handed alpha
Helix 28
28
B
375 381Right-handed alpha
Helix 29
29
B
386 388Right-handed 310
Helix 30
30
B
502 505Right-handed 310
Helix 31
31
B
570 573Right-handed 310
Helix 32
32
B
620 627Right-handed 310
Helix 33
33
B
658 663Right-handed 310
Helix 34
34
B
686 690Right-handed 310
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There are 6 sheets in PDB entry 1TU5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 30 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
136 143anti-parallel
Strand 3
A
163 164anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
122 129anti-parallel
Strand 6
A
93 101anti-parallel
Strand 7
A
408 416anti-parallel
Strand 8
A
422 441anti-parallel
Strand 9
A
453 465anti-parallel
Strand 10
A
472 478anti-parallel
Strand 11
A
484 490anti-parallel
Strand 12
A
700 707anti-parallel
Strand 13
A
599 607anti-parallel
Strand 14
A
585 593anti-parallel
Strand 15
A
535 550anti-parallel
Strand 16
A
553 567anti-parallel
Strand 17
A
535 550anti-parallel
Strand 18
A
671 683anti-parallel
Strand 19
A
629 635anti-parallel
Strand 20
A
575 577anti-parallel
Strand 21
A
629 635anti-parallel
Strand 22
A
671 683anti-parallel
Strand 23
A
519 529anti-parallel
Strand 24
A
356 371anti-parallel
Strand 25
A
382 384parallel
Strand 26
A
356 371anti-parallel
Strand 27
A
345 353anti-parallel
Strand 28
A
334 341anti-parallel
Strand 29
A
328 331anti-parallel
Strand 30
A
322 325anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
223 230anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
259 265anti-parallel
Strand 5
A
268 270anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
514 517anti-parallel
Strand 3
A
507 511anti-parallel
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There are 30 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
136 143anti-parallel
Strand 3
B
163 164anti-parallel
Strand 4
B
136 143anti-parallel
Strand 5
B
122 129anti-parallel
Strand 6
B
93 101anti-parallel
Strand 7
B
408 416anti-parallel
Strand 8
B
422 441anti-parallel
Strand 9
B
453 465anti-parallel
Strand 10
B
472 478anti-parallel
Strand 11
B
484 490anti-parallel
Strand 12
B
700 707anti-parallel
Strand 13
B
599 607anti-parallel
Strand 14
B
585 593anti-parallel
Strand 15
B
535 550anti-parallel
Strand 16
B
553 567anti-parallel
Strand 17
B
535 550anti-parallel
Strand 18
B
671 683anti-parallel
Strand 19
B
629 635anti-parallel
Strand 20
B
575 577anti-parallel
Strand 21
B
629 635anti-parallel
Strand 22
B
671 683anti-parallel
Strand 23
B
519 529anti-parallel
Strand 24
B
356 371anti-parallel
Strand 25
B
382 384parallel
Strand 26
B
356 371anti-parallel
Strand 27
B
345 353anti-parallel
Strand 28
B
334 341anti-parallel
Strand 29
B
328 331anti-parallel
Strand 30
B
322 325anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
223 230anti-parallel
Strand 3
B
241 249anti-parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
268 270anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 498first strand
Strand 2
B
514 517anti-parallel
Strand 3
B
507 511anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il