Analysis of interatomic Contacts of Structural Units in PDB entry:
1TUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1TUE entry

There are 12 chains in PDB entry 1TUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 425	LEU 629
B	HIS 0	PHE 193
D	ASN 428	LEU 629
E	THR 3	ILE 198
F	ASN 428	ASP 628
G	PRO 4	ASP 199
H	ASN 428	ASP 628
J	PRO 4	VAL 197
K	ASN 428	LEU 629
L	PRO 4	VAL 197
M	ASN 428	LEU 629
Q	PRO 4	VAL 197

There are 94 helices in PDB entry 1TUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	428	439	Right-handed alpha
Helix 2	2	A	446	456	Right-handed alpha
Helix 3	3	A	459	473	Right-handed alpha
Helix 4	4	A	485	488	Right-handed 310
Helix 5	5	A	489	502	Right-handed alpha
Helix 6	6	A	514	521	Right-handed 310
Helix 7	7	A	532	543	Right-handed alpha
Helix 8	8	A	543	549	Right-handed alpha
Helix 9	9	A	583	588	Right-handed alpha
Helix 10	10	A	612	624	Right-handed alpha
Helix 11	11	A	625	628	Right-handed 310
Helix 12	12	B	3	26	Right-handed alpha
Helix 13	13	B	29	53	Right-handed alpha
Helix 14	14	B	65	87	Right-handed alpha
Helix 15	15	B	102	107	Right-handed alpha
Helix 16	16	B	176	184	Right-handed alpha
Helix 17	17	D	428	439	Right-handed alpha
Helix 18	18	D	446	456	Right-handed alpha
Helix 19	19	D	459	472	Right-handed alpha
Helix 20	20	D	485	488	Right-handed 310
Helix 21	21	D	489	502	Right-handed alpha
Helix 22	22	D	513	521	Right-handed 310
Helix 23	23	D	532	543	Right-handed alpha
Helix 24	24	D	543	548	Right-handed alpha
Helix 25	25	D	583	588	Right-handed alpha
Helix 26	26	D	612	628	Right-handed alpha
Helix 27	27	E	3	26	Right-handed alpha
Helix 28	28	E	29	53	Right-handed alpha
Helix 29	29	E	65	88	Right-handed alpha
Helix 30	30	E	102	107	Right-handed alpha
Helix 31	31	E	176	181	Right-handed alpha
Helix 32	32	F	428	439	Right-handed alpha
Helix 33	33	F	446	456	Right-handed alpha
Helix 34	34	F	459	472	Right-handed alpha
Helix 35	35	F	485	488	Right-handed 310
Helix 36	36	F	489	502	Right-handed alpha
Helix 37	37	F	517	521	Right-handed 310
Helix 38	38	F	532	542	Right-handed alpha
Helix 39	39	F	543	548	Right-handed alpha
Helix 40	40	F	612	623	Right-handed alpha
Helix 41	41	F	623	628	Right-handed alpha
Helix 42	42	G	4	26	Right-handed alpha
Helix 43	43	G	29	53	Right-handed alpha
Helix 44	44	G	65	87	Right-handed alpha
Helix 45	45	G	88	94	Right-handed 310
Helix 46	46	G	102	107	Right-handed alpha
Helix 47	47	G	176	181	Right-handed alpha
Helix 48	48	H	428	440	Right-handed alpha
Helix 49	49	H	446	456	Right-handed alpha
Helix 50	50	H	459	473	Right-handed alpha
Helix 51	51	H	485	488	Right-handed 310
Helix 52	52	H	489	502	Right-handed alpha
Helix 53	53	H	514	521	Right-handed 310
Helix 54	54	H	532	543	Right-handed alpha
Helix 55	55	H	543	549	Right-handed alpha
Helix 56	56	H	583	588	Right-handed alpha
Helix 57	57	H	612	624	Right-handed alpha
Helix 58	58	H	625	628	Right-handed 310
Helix 59	59	J	4	26	Right-handed alpha
Helix 60	60	J	29	53	Right-handed alpha
Helix 61	61	J	65	87	Right-handed alpha
Helix 62	62	J	102	107	Right-handed alpha
Helix 63	63	J	176	184	Right-handed alpha
Helix 64	64	K	428	439	Right-handed alpha
Helix 65	65	K	446	456	Right-handed alpha
Helix 66	66	K	459	473	Right-handed alpha
Helix 67	67	K	485	488	Right-handed 310
Helix 68	68	K	489	502	Right-handed alpha
Helix 69	69	K	514	523	Right-handed 310
Helix 70	70	K	532	543	Right-handed alpha
Helix 71	71	K	543	548	Right-handed alpha
Helix 72	72	K	583	588	Right-handed alpha
Helix 73	73	K	612	624	Right-handed alpha
Helix 74	74	K	625	628	Right-handed 310
Helix 75	75	L	5	26	Right-handed alpha
Helix 76	76	L	29	52	Right-handed alpha
Helix 77	77	L	65	87	Right-handed alpha
Helix 78	78	L	102	108	Right-handed alpha
Helix 79	79	L	176	181	Right-handed alpha
Helix 80	80	M	428	439	Right-handed alpha
Helix 81	81	M	446	456	Right-handed alpha
Helix 82	82	M	459	473	Right-handed alpha
Helix 83	83	M	485	488	Right-handed 310
Helix 84	84	M	489	502	Right-handed alpha
Helix 85	85	M	514	521	Right-handed 310
Helix 86	86	M	532	543	Right-handed alpha
Helix 87	87	M	543	548	Right-handed alpha
Helix 88	88	M	583	588	Right-handed alpha
Helix 89	89	M	612	624	Right-handed alpha
Helix 90	90	Q	4	26	Right-handed alpha
Helix 91	91	Q	29	53	Right-handed alpha
Helix 92	92	Q	65	87	Right-handed alpha
Helix 93	93	Q	102	107	Right-handed alpha
Helix 94	94	Q	176	184	Right-handed alpha

There are 29 sheets in PDB entry 1TUE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	526	531	parallel
Strand 3	A	569	573	parallel
Strand 4	A	479	483	parallel
Strand 5	A	591	594	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	562	564	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	61	62	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	132	144	anti-parallel
Strand 3	B	114	125	anti-parallel
Strand 4	B	189	192	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	169	175	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	505	first strand
Strand 2	D	526	531	parallel
Strand 3	D	569	573	parallel
Strand 4	D	479	483	parallel
Strand 5	D	591	594	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	562	564	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	61	62	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	153	first strand
Strand 2	E	132	144	anti-parallel
Strand 3	E	114	125	anti-parallel
Strand 4	E	189	193	anti-parallel
Strand 5	E	196	197	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	161	166	anti-parallel
Strand 3	E	169	175	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	504	506	first strand
Strand 2	F	526	528	parallel
Strand 3	F	569	573	parallel
Strand 4	F	479	483	parallel
Strand 5	F	591	594	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	58	first strand
Strand 2	G	61	62	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	116	first strand
Strand 2	G	140	144	anti-parallel
Strand 3	G	150	153	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	120	125	anti-parallel
Strand 3	G	189	193	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	158	first strand
Strand 2	G	161	166	anti-parallel
Strand 3	G	169	175	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	504	505	first strand
Strand 2	H	526	531	parallel
Strand 3	H	569	573	parallel
Strand 4	H	479	483	parallel
Strand 5	H	591	594	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	58	first strand
Strand 2	J	61	62	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	150	153	first strand
Strand 2	J	132	144	anti-parallel
Strand 3	J	114	125	anti-parallel
Strand 4	J	189	192	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	157	first strand
Strand 2	J	161	166	anti-parallel
Strand 3	J	169	175	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	504	506	first strand
Strand 2	K	526	531	parallel
Strand 3	K	569	573	parallel
Strand 4	K	479	483	parallel
Strand 5	K	591	594	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	61	62	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	153	first strand
Strand 2	L	132	144	anti-parallel
Strand 3	L	114	125	anti-parallel
Strand 4	L	189	192	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	161	166	anti-parallel
Strand 3	L	169	175	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	504	505	first strand
Strand 2	M	526	531	parallel
Strand 3	M	569	573	parallel
Strand 4	M	479	483	parallel
Strand 5	M	591	594	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	551	552	first strand
Strand 2	M	564	565	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	57	58	first strand
Strand 2	Q	61	62	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	116	first strand
Strand 2	Q	140	144	anti-parallel
Strand 3	Q	150	153	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	132	136	first strand
Strand 2	Q	120	125	anti-parallel
Strand 3	Q	189	193	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	155	157	first strand
Strand 2	Q	161	165	anti-parallel
Strand 3	Q	170	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1TUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
1TUE