Analysis of interatomic Contacts of Structural Units in PDB entry:
1TUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TUO entry

There is 1 chain in PDB entry 1TUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 8GLY 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1TUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 46Right-handed alpha
Helix 2
2
A
60 75Right-handed alpha
Helix 3
3
A
87 98Right-handed alpha
Helix 4
4
A
129 139Right-handed alpha
Helix 5
5
A
156 166Right-handed alpha
Helix 6
6
A
169 174Right-handed alpha
Helix 7
7
A
191 200Right-handed alpha
Helix 8
8
A
216 220Right-handed 310
Helix 9
9
A
225 228Right-handed 310
Helix 10
10
A
229 237Right-handed alpha
Helix 11
11
A
266 281Right-handed alpha
Helix 12
12
A
295 305Right-handed alpha
Helix 13
13
A
314 323Right-handed alpha
Helix 14
14
A
347 363Right-handed alpha
Helix 15
15
A
365 378Right-handed alpha
Helix 16
16
A
447 460Right-handed alpha
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There are 5 sheets in PDB entry 1TUO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
126 127anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
50 55parallel
Strand 5
A
78 82parallel
Strand 6
A
152 154parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
180 183parallel
Strand 3
A
244 248parallel
Strand 4
A
255 259anti-parallel
Strand 5
A
263 265anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
286 290parallel
Strand 3
A
327 331parallel
Strand 4
A
337 339anti-parallel
Strand 5
A
343 346anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 386first strand
Strand 2
A
440 445anti-parallel
Strand 3
A
426 431anti-parallel
Strand 4
A
419 423anti-parallel
Strand 5
A
410 414anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il