Analysis of interatomic Contacts of Structural Units in PDB entry:
1TUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TUP entry

There are 5 chains in PDB entry 1TUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 T 1001 A 1021
F
 A 1101 A 1121
A
 SER 94LEU 289
B
 SER 96LEU 289
C
 SER 95LEU 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1TUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
166 168Right-handed 310
Helix 2
2
A
177 180Right-handed alpha
Helix 3
3
A
278 287Right-handed alpha
Helix 4
4
B
167 170Right-handed 310
Helix 5
5
B
177 181Right-handed alpha
Helix 6
6
B
278 287Right-handed alpha
Helix 7
7
C
105 107Right-handed 310
Helix 8
8
C
166 169Right-handed alpha
Helix 9
9
C
177 181Right-handed alpha
Helix 10
10
C
278 285Right-handed alpha
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There are 6 sheets in PDB entry 1TUP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
195 198anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
264 274parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
156 163anti-parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
204 207anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
141 146anti-parallel
Strand 3
B
230 236anti-parallel
Strand 4
B
195 197anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
132 135anti-parallel
Strand 3
B
264 274parallel
Strand 4
B
251 258anti-parallel
Strand 5
B
156 163anti-parallel
Strand 6
B
214 219anti-parallel
Strand 7
B
204 207anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 113first strand
Strand 2
C
141 146anti-parallel
Strand 3
C
230 236anti-parallel
Strand 4
C
195 197anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
132 136anti-parallel
Strand 3
C
264 275parallel
Strand 4
C
251 258anti-parallel
Strand 5
C
156 163anti-parallel
Strand 6
C
214 219anti-parallel
Strand 7
C
204 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il