Analysis of interatomic Contacts of Structural Units in PDB entry:
1TVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TVF entry

There are 2 chains in PDB entry 1TVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15GLN 383
B
 GLY 15GLN 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1TVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
44 48Right-handed 310
Helix 4
4
A
73 75Right-handed 310
Helix 5
5
A
76 91Right-handed alpha
Helix 6
6
A
103 110Right-handed alpha
Helix 7
7
A
128 138Right-handed alpha
Helix 8
8
A
140 152Right-handed alpha
Helix 9
9
A
154 169Right-handed alpha
Helix 10
10
A
183 188Right-handed alpha
Helix 11
11
A
189 191Right-handed 310
Helix 12
12
A
192 196Right-handed 310
Helix 13
13
A
204 219Right-handed alpha
Helix 14
14
A
221 227Right-handed alpha
Helix 15
15
A
296 314Right-handed alpha
Helix 16
16
A
348 352Right-handed 310
Helix 17
17
B
15 21Right-handed alpha
Helix 18
18
B
30 39Right-handed alpha
Helix 19
19
B
44 48Right-handed 310
Helix 20
20
B
73 75Right-handed 310
Helix 21
21
B
76 91Right-handed alpha
Helix 22
22
B
103 110Right-handed alpha
Helix 23
23
B
128 138Right-handed alpha
Helix 24
24
B
140 152Right-handed alpha
Helix 25
25
B
154 170Right-handed alpha
Helix 26
26
B
183 188Right-handed alpha
Helix 27
27
B
189 191Right-handed 310
Helix 28
28
B
192 196Right-handed 310
Helix 29
29
B
204 219Right-handed alpha
Helix 30
30
B
221 227Right-handed alpha
Helix 31
31
B
296 314Right-handed alpha
Helix 32
32
B
348 352Right-handed 310
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There are 10 sheets in PDB entry 1TVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
279 288anti-parallel
Strand 4
A
267 276anti-parallel
Strand 5
A
255 263anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
125 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
236 237anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 321first strand
Strand 2
A
339 344anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 328first strand
Strand 2
A
331 335anti-parallel
Strand 3
A
379 382anti-parallel
Strand 4
A
360 364anti-parallel
Strand 5
A
353 357anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
51 56anti-parallel
Strand 3
B
279 288anti-parallel
Strand 4
B
267 276anti-parallel
Strand 5
B
255 263anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
125 127anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
236 237anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 321first strand
Strand 2
B
339 344anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 328first strand
Strand 2
B
331 335anti-parallel
Strand 3
B
379 382anti-parallel
Strand 4
B
360 364anti-parallel
Strand 5
B
353 357anti-parallel
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