Analysis of interatomic Contacts of Structural Units in PDB entry:
1TVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TVL entry

There is 1 chain in PDB entry 1TVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3GLN 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1TVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
31 34Right-handed 310
Helix 3
3
A
35 49Right-handed alpha
Helix 4
4
A
67 72Right-handed alpha
Helix 5
5
A
75 85Right-handed alpha
Helix 6
6
A
102 117Right-handed alpha
Helix 7
7
A
130 135Right-handed alpha
Helix 8
8
A
144 164Right-handed alpha
Helix 9
9
A
182 186Right-handed 310
Helix 10
10
A
220 231Right-handed alpha
Helix 11
11
A
240 258Right-handed alpha
Helix 12
12
A
261 265Right-handed 310
Helix 13
13
A
278 291Right-handed alpha
Helix 14
14
A
292 293Right-handed 310
Helix 15
15
A
294 299Right-handed 310
Helix 16
16
A
348 358Right-handed alpha
Helix 17
17
A
366 380Right-handed alpha
Helix 18
18
A
394 410Right-handed alpha
Helix 19
19
A
421 427Right-handed alpha
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There are 3 sheets in PDB entry 1TVL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
53 56parallel
Strand 3
A
91 97parallel
Strand 4
A
121 126parallel
Strand 5
A
213 216parallel
Strand 6
A
233 236parallel
Strand 7
A
266 271parallel
Strand 8
A
385 388parallel
Strand 9
A
8 12parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
197 198anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
364 365parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il