Analysis of interatomic Contacts of Structural Units in PDB entry:
1TVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TVP entry

There are 2 chains in PDB entry 1TVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 293
B
 ALA 1TRP 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1TVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 39Right-handed 310
Helix 2
2
A
40 52Right-handed alpha
Helix 3
3
A
73 91Right-handed alpha
Helix 4
4
A
103 106Right-handed 310
Helix 5
5
A
107 123Right-handed alpha
Helix 6
6
A
144 158Right-handed alpha
Helix 7
7
A
169 174Right-handed alpha
Helix 8
8
A
175 182Right-handed alpha
Helix 9
9
A
201 214Right-handed alpha
Helix 10
10
A
235 250Right-handed alpha
Helix 11
11
A
278 290Right-handed alpha
Helix 12
12
B
35 39Right-handed 310
Helix 13
13
B
40 52Right-handed alpha
Helix 14
14
B
73 91Right-handed alpha
Helix 15
15
B
103 106Right-handed 310
Helix 16
16
B
107 123Right-handed alpha
Helix 17
17
B
144 158Right-handed alpha
Helix 18
18
B
169 174Right-handed alpha
Helix 19
19
B
175 181Right-handed alpha
Helix 20
20
B
201 214Right-handed alpha
Helix 21
21
B
235 248Right-handed alpha
Helix 22
22
B
278 291Right-handed alpha
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There are 4 sheets in PDB entry 1TVP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
17 18anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
55 61parallel
Strand 3
A
94 100parallel
Strand 4
A
128 131parallel
Strand 5
A
164 167parallel
Strand 6
A
189 196parallel
Strand 7
A
218 224parallel
Strand 8
A
253 258parallel
Strand 9
A
22 26parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
17 18anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
55 61parallel
Strand 3
B
94 100parallel
Strand 4
B
128 131parallel
Strand 5
B
164 167parallel
Strand 6
B
189 196parallel
Strand 7
B
218 224parallel
Strand 8
B
253 258parallel
Strand 9
B
22 26parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il