Analysis of interatomic Contacts of Structural Units in PDB entry:
1TVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TVR entry

There are 2 chains in PDB entry 1TVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1LYS 558
B
 PRO 1TYR 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1TVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 43Right-handed alpha
Helix 2
2
A
78 83Right-handed alpha
Helix 3
3
A
97 99Right-handed 310
Helix 4
4
A
114 117Right-handed alpha
Helix 5
5
A
126 128Right-handed 310
Helix 6
6
A
156 167Right-handed alpha
Helix 7
7
A
171 174Right-handed alpha
Helix 8
8
A
197 211Right-handed alpha
Helix 9
9
A
229 231Right-handed 310
Helix 10
10
A
254 269Right-handed alpha
Helix 11
11
A
277 284Right-handed alpha
Helix 12
12
A
297 311Right-handed alpha
Helix 13
13
A
366 383Right-handed alpha
Helix 14
14
A
395 402Right-handed alpha
Helix 15
15
A
474 478Right-handed 310
Helix 16
16
A
480 485Right-handed alpha
Helix 17
17
A
501 508Right-handed alpha
Helix 18
18
A
516 526Right-handed alpha
Helix 19
19
A
543 555Right-handed alpha
Helix 20
20
B
28 43Right-handed alpha
Helix 21
21
B
78 85Right-handed alpha
Helix 22
22
B
87 91Right-handed alpha
Helix 23
23
B
100 102Right-handed 310
Helix 24
24
B
111 117Right-handed 310
Helix 25
25
B
125 128Right-handed 310
Helix 26
26
B
156 174Right-handed alpha
Helix 27
27
B
195 213Right-handed alpha
Helix 28
28
B
254 270Right-handed alpha
Helix 29
29
B
277 283Right-handed alpha
Helix 30
30
B
297 311Right-handed alpha
Helix 31
31
B
364 372Right-handed alpha
Helix 32
32
B
374 381Right-handed alpha
Helix 33
33
B
395 405Right-handed alpha
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There are 11 sheets in PDB entry 1TVR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
144 146anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
72 74anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
178 183anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
238 240anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
388 391parallel
Strand 3
A
326 330parallel
Strand 4
A
338 342anti-parallel
Strand 5
A
350 353anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 457first strand
Strand 2
A
465 470anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 497first strand
Strand 2
A
533 535parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 190anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
388 391parallel
Strand 3
B
414 416parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
350 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il