Analysis of interatomic Contacts of Structural Units in PDB entry:
1TVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TVZ entry

There are 2 chains in PDB entry 1TVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 110
A
 TYR 112GLU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1TVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
29 35Right-handed alpha
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
64 70Right-handed alpha
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
109 112Right-handed 310
Helix 7
7
A
113 126Right-handed alpha
Helix 8
8
A
149 153Right-handed 310
Helix 9
9
A
200 221Right-handed alpha
Helix 10
10
A
223 227Right-handed 310
Helix 11
11
A
236 248Right-handed alpha
Helix 12
12
A
252 272Right-handed alpha
Helix 13
13
A
276 278Right-handed 310
Helix 14
14
A
279 292Right-handed alpha
Helix 15
15
A
321 326Right-handed 310
Helix 16
16
A
327 337Right-handed alpha
Helix 17
17
A
342 356Right-handed alpha
Helix 18
18
A
364 368Right-handed 310
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There are 5 sheets in PDB entry 1TVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
71 77parallel
Strand 3
A
132 141parallel
Strand 4
A
154 164anti-parallel
Strand 5
A
3 11anti-parallel
Strand 6
A
169 171anti-parallel
Strand 7
A
310 318anti-parallel
Strand 8
A
176 179anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
71 77parallel
Strand 3
A
132 141parallel
Strand 4
A
154 164anti-parallel
Strand 5
A
3 11anti-parallel
Strand 6
A
169 171anti-parallel
Strand 7
A
310 318anti-parallel
Strand 8
A
299 306anti-parallel
Strand 9
A
229 232parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
339 341parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
195 196anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
381 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il