Analysis of interatomic Contacts of Structural Units in PDB entry:
1TY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TY0 entry

There are 3 chains in PDB entry 1TY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 211
B
 LYS 1LYS 211
C
 SER 4LYS 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1TY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 19Right-handed alpha
Helix 2
2
A
42 47Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
131 147Right-handed alpha
Helix 5
5
A
182 188Right-handed alpha
Helix 6
6
A
189 193Right-handed 310
Helix 7
7
B
4 19Right-handed alpha
Helix 8
8
B
42 47Right-handed alpha
Helix 9
9
B
60 64Right-handed 310
Helix 10
10
B
131 147Right-handed alpha
Helix 11
11
B
182 188Right-handed alpha
Helix 12
12
B
189 193Right-handed 310
Helix 13
13
C
7 18Right-handed alpha
Helix 14
14
C
42 47Right-handed alpha
Helix 15
15
C
57 63Right-handed 310
Helix 16
16
C
131 147Right-handed alpha
Helix 17
17
C
182 188Right-handed alpha
Helix 18
18
C
189 193Right-handed 310
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There are 9 sheets in PDB entry 1TY0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
51 55parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
23 33anti-parallel
Strand 5
A
69 74anti-parallel
Strand 6
A
91 93anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 119first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
201 209parallel
Strand 4
A
157 164anti-parallel
Strand 5
A
168 173anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
195 197anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
51 55parallel
Strand 3
B
37 41anti-parallel
Strand 4
B
23 33anti-parallel
Strand 5
B
69 74anti-parallel
Strand 6
B
91 93anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 119first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
201 209parallel
Strand 4
B
157 164anti-parallel
Strand 5
B
170 173anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
195 197anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 88first strand
Strand 2
C
51 55parallel
Strand 3
C
37 41anti-parallel
Strand 4
C
23 33anti-parallel
Strand 5
C
69 74anti-parallel
Strand 6
C
91 93anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 119first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
201 209parallel
Strand 4
C
157 164anti-parallel
Strand 5
C
168 173anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 130first strand
Strand 2
C
195 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il