Analysis of interatomic Contacts of Structural Units in PDB entry:
1TYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TYP entry

There are 2 chains in PDB entry 1TYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 487
B
 SER 2ILE 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1TYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
49 56Right-handed alpha
Helix 3
3
A
56 76Right-handed alpha
Helix 4
4
A
77 79Right-handed 310
Helix 5
5
A
84 88Right-handed 310
Helix 6
6
A
91 117Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
177 182Right-handed alpha
Helix 9
9
A
197 211Right-handed alpha
Helix 10
10
A
231 245Right-handed alpha
Helix 11
11
A
326 330Right-handed 310
Helix 12
12
A
334 351Right-handed alpha
Helix 13
13
A
378 386Right-handed alpha
Helix 14
14
A
398 405Right-handed alpha
Helix 15
15
A
433 448Right-handed alpha
Helix 16
16
A
450 456Right-handed alpha
Helix 17
17
A
464 468Right-handed 310
Helix 18
18
B
13 28Right-handed alpha
Helix 19
19
B
49 56Right-handed alpha
Helix 20
20
B
56 77Right-handed alpha
Helix 21
21
B
84 88Right-handed 310
Helix 22
22
B
91 117Right-handed alpha
Helix 23
23
B
171 175Right-handed 310
Helix 24
24
B
177 182Right-handed alpha
Helix 25
25
B
197 211Right-handed alpha
Helix 26
26
B
231 245Right-handed alpha
Helix 27
27
B
295 300Right-handed 310
Helix 28
28
B
326 330Right-handed 310
Helix 29
29
B
334 351Right-handed alpha
Helix 30
30
B
378 386Right-handed alpha
Helix 31
31
B
399 405Right-handed alpha
Helix 32
32
B
433 447Right-handed alpha
Helix 33
33
B
450 456Right-handed alpha
Helix 34
34
B
464 470Right-handed 310
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There are 14 sheets in PDB entry 1TYP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
31 35parallel
Strand 3
A
5 10parallel
Strand 4
A
147 158parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
126 131anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
31 35parallel
Strand 3
A
5 10parallel
Strand 4
A
147 158parallel
Strand 5
A
322 324parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
B
89 90anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
B
81 82anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
287 289anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 251first strand
Strand 2
A
216 221parallel
Strand 3
A
190 194parallel
Strand 4
A
280 283parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
275 278anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
424 430anti-parallel
Strand 4
A
411 418anti-parallel
Strand 5
A
388 396anti-parallel
Strand 6
A
476 479anti-parallel
Strand 7
A
482 484anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
31 35parallel
Strand 3
B
5 10parallel
Strand 4
B
147 158parallel
Strand 5
B
134 138anti-parallel
Strand 6
B
126 131anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
31 35parallel
Strand 3
B
5 10parallel
Strand 4
B
147 158parallel
Strand 5
B
322 324parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
287 289anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 251first strand
Strand 2
B
216 221parallel
Strand 3
B
190 194parallel
Strand 4
B
280 283parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
266 270anti-parallel
Strand 3
B
275 278anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 366first strand
Strand 2
B
372 376anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
411 418anti-parallel
Strand 5
B
388 396anti-parallel
Strand 6
B
476 479anti-parallel
Strand 7
B
482 483anti-parallel
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