Analysis of interatomic Contacts of Structural Units in PDB entry:
1TZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TZ9 entry

There are 2 chains in PDB entry 1TZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 353
B
 MSE 1LYS 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 1TZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
43 57Right-handed alpha
Helix 3
3
A
70 76Right-handed alpha
Helix 4
4
A
79 97Right-handed alpha
Helix 5
5
A
132 137Right-handed alpha
Helix 6
6
A
139 147Right-handed alpha
Helix 7
7
A
160 174Right-handed alpha
Helix 8
8
A
178 201Right-handed alpha
Helix 9
9
A
224 235Right-handed alpha
Helix 10
10
A
247 252Right-handed alpha
Helix 11
11
A
256 265Right-handed alpha
Helix 12
12
A
266 268Right-handed 310
Helix 13
13
A
290 294Right-handed 310
Helix 14
14
A
297 309Right-handed alpha
Helix 15
15
A
333 341Right-handed alpha
Helix 16
16
A
341 352Right-handed alpha
Helix 17
17
B
16 21Right-handed alpha
Helix 18
18
B
43 57Right-handed alpha
Helix 19
19
B
70 76Right-handed alpha
Helix 20
20
B
79 97Right-handed alpha
Helix 21
21
B
131 137Right-handed alpha
Helix 22
22
B
139 147Right-handed alpha
Helix 23
23
B
163 175Right-handed alpha
Helix 24
24
B
178 201Right-handed alpha
Helix 25
25
B
224 235Right-handed alpha
Helix 26
26
B
246 251Right-handed alpha
Helix 27
27
B
256 264Right-handed alpha
Helix 28
28
B
297 308Right-handed alpha
Helix 29
29
B
333 352Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1TZ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
313 316parallel
Strand 3
A
271 273parallel
Strand 4
A
244 245parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
60 64parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
203 206parallel
Strand 3
A
240 241parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
126 131anti-parallel
Strand 3
A
283 286anti-parallel
Strand 4
A
276 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
313 314parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
60 64parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
203 206parallel
Strand 3
B
240 245parallel
Strand 4
B
268 272parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
284 286anti-parallel
Strand 4
B
276 277anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il