Analysis of interatomic Contacts of Structural Units in PDB entry:
1U04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U04 entry

There is 1 chain in PDB entry 1U04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0VAL 770
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1U04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
40 48Right-handed alpha
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
84 99Right-handed alpha
Helix 5
5
A
102 111Right-handed alpha
Helix 6
6
A
154 159Right-handed alpha
Helix 7
7
A
162 173Right-handed alpha
Helix 8
8
A
206 222Right-handed alpha
Helix 9
9
A
224 236Right-handed alpha
Helix 10
10
A
275 277Right-handed 310
Helix 11
11
A
283 290Right-handed alpha
Helix 12
12
A
292 307Right-handed alpha
Helix 13
13
A
325 330Right-handed 310
Helix 14
14
A
356 361Right-handed 310
Helix 15
15
A
374 379Right-handed alpha
Helix 16
16
A
393 412Right-handed alpha
Helix 17
17
A
452 468Right-handed alpha
Helix 18
18
A
484 498Right-handed alpha
Helix 19
19
A
507 513Right-handed alpha
Helix 20
20
A
523 538Right-handed alpha
Helix 21
21
A
599 614Right-handed alpha
Helix 22
22
A
632 647Right-handed alpha
Helix 23
23
A
713 725Right-handed alpha
Helix 24
24
A
738 753Right-handed alpha
Helix 25
25
A
758 763Right-handed alpha
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There are 8 sheets in PDB entry 1U04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
318 323anti-parallel
Strand 3
A
669 673anti-parallel
Strand 4
A
676 680anti-parallel
Strand 5
A
694 703anti-parallel
Strand 6
A
649 656anti-parallel
Strand 7
A
622 626parallel
Strand 8
A
553 562parallel
Strand 9
A
569 577anti-parallel
Strand 10
A
582 589anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
318 323anti-parallel
Strand 3
A
669 673anti-parallel
Strand 4
A
676 680anti-parallel
Strand 5
A
694 703anti-parallel
Strand 6
A
706 709anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
139 151anti-parallel
Strand 3
A
268 273anti-parallel
Strand 4
A
178 181anti-parallel
Strand 5
A
189 192anti-parallel
Strand 6
A
244 249anti-parallel
Strand 7
A
203 204anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
122 134anti-parallel
Strand 3
A
139 151anti-parallel
Strand 4
A
268 273anti-parallel
Strand 5
A
178 181anti-parallel
Strand 6
A
189 192anti-parallel
Strand 7
A
244 249anti-parallel
Strand 8
A
261 263anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
59 62anti-parallel
Strand 3
A
21 25anti-parallel
Strand 4
A
73 78anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
332 335anti-parallel
Strand 3
A
544 545anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
384 389parallel
Strand 3
A
473 479parallel
Strand 4
A
500 506parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
518 522anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il