Analysis of interatomic Contacts of Structural Units in PDB entry:
1U05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U05 entry

There are 2 chains in PDB entry 1U05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 243
B
 MET 1ILE 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1U05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 59Right-handed alpha
Helix 2
2
A
126 132Right-handed alpha
Helix 3
3
A
133 140Right-handed alpha
Helix 4
4
A
145 147Right-handed 310
Helix 5
5
A
165 174Right-handed alpha
Helix 6
6
A
176 181Right-handed 310
Helix 7
7
A
193 206Right-handed alpha
Helix 8
8
A
226 231Right-handed alpha
Helix 9
9
B
43 58Right-handed alpha
Helix 10
10
B
126 132Right-handed alpha
Helix 11
11
B
133 140Right-handed alpha
Helix 12
12
B
145 147Right-handed 310
Helix 13
13
B
165 176Right-handed alpha
Helix 14
14
B
177 181Right-handed 310
Helix 15
15
B
193 205Right-handed alpha
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There are 6 sheets in PDB entry 1U05. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
236 242anti-parallel
Strand 4
A
99 104anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
90 93parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
108 114anti-parallel
Strand 5
A
149 153anti-parallel
Strand 6
A
209 212parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
183 186anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
236 242anti-parallel
Strand 3
B
99 104anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
90 93parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
108 114anti-parallel
Strand 5
B
149 153anti-parallel
Strand 6
B
209 212parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
189 192anti-parallel
Strand 3
B
183 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il