Analysis of interatomic Contacts of Structural Units in PDB entry:
1U08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U08 entry

There are 2 chains in PDB entry 1U08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5LEU 386
B
 PRO 5LEU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1U08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
45 58Right-handed alpha
Helix 3
3
A
69 85Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
127 135Right-handed alpha
Helix 6
6
A
152 160Right-handed alpha
Helix 7
7
A
181 193Right-handed alpha
Helix 8
8
A
217 220Right-handed 310
Helix 9
9
A
221 226Right-handed alpha
Helix 10
10
A
234 238Right-handed alpha
Helix 11
11
A
240 244Right-handed 310
Helix 12
12
A
251 266Right-handed alpha
Helix 13
13
A
270 284Right-handed alpha
Helix 14
14
A
285 290Right-handed alpha
Helix 15
15
A
290 306Right-handed alpha
Helix 16
16
A
333 345Right-handed alpha
Helix 17
17
A
353 356Right-handed 310
Helix 18
18
A
372 384Right-handed alpha
Helix 19
19
B
18 30Right-handed alpha
Helix 20
20
B
45 58Right-handed alpha
Helix 21
21
B
69 85Right-handed alpha
Helix 22
22
B
99 112Right-handed alpha
Helix 23
23
B
127 135Right-handed alpha
Helix 24
24
B
152 160Right-handed alpha
Helix 25
25
B
181 193Right-handed alpha
Helix 26
26
B
217 220Right-handed 310
Helix 27
27
B
221 226Right-handed alpha
Helix 28
28
B
234 238Right-handed alpha
Helix 29
29
B
240 244Right-handed 310
Helix 30
30
B
251 266Right-handed alpha
Helix 31
31
B
270 284Right-handed alpha
Helix 32
32
B
286 289Right-handed 310
Helix 33
33
B
290 307Right-handed alpha
Helix 34
34
B
333 346Right-handed alpha
Helix 35
35
B
353 356Right-handed 310
Helix 36
36
B
372 384Right-handed alpha
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There are 6 sheets in PDB entry 1U08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
347 348parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
246 249anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
198 202parallel
Strand 5
A
164 170parallel
Strand 6
A
117 122parallel
Strand 7
A
138 143parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
350 351anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
347 348parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
246 249anti-parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
198 202parallel
Strand 5
B
164 170parallel
Strand 6
B
117 122parallel
Strand 7
B
138 143parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 313first strand
Strand 2
B
321 325anti-parallel
Strand 3
B
364 368anti-parallel
Strand 4
B
350 351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il