Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0B entry

There are 2 chains in PDB entry 1U0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 1 A 76
B
 MET 1LYS 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1U0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
37 57Right-handed alpha
Helix 2
2
B
71 82Right-handed alpha
Helix 3
3
B
84 103Right-handed alpha
Helix 4
4
B
117 131Right-handed alpha
Helix 5
5
B
146 149Right-handed 310
Helix 6
6
B
159 166Right-handed alpha
Helix 7
7
B
206 218Right-handed alpha
Helix 8
8
B
229 231Right-handed 310
Helix 9
9
B
233 246Right-handed alpha
Helix 10
10
B
276 281Right-handed alpha
Helix 11
11
B
285 294Right-handed alpha
Helix 12
12
B
305 324Right-handed alpha
Helix 13
13
B
335 348Right-handed alpha
Helix 14
14
B
351 371Right-handed alpha
Helix 15
15
B
373 390Right-handed alpha
Helix 16
16
B
397 403Right-handed alpha
Helix 17
17
B
412 417Right-handed alpha
Helix 18
18
B
418 429Right-handed alpha
Helix 19
19
B
431 445Right-handed alpha
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There are 5 sheets in PDB entry 1U0B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
12 14anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
22 27parallel
Strand 3
B
221 227parallel
Strand 4
B
251 257parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
142 144anti-parallel
Strand 3
B
181 186anti-parallel
Strand 4
B
201 202anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
260 262anti-parallel
Strand 3
B
302 303parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 451first strand
Strand 2
B
456 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il