Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0D entry

There are 4 chains in PDB entry 1U0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 501 G 524
D
 C 551 C 574
A
 ASN 2ASP 153
B
 ASN 302ASP 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1U0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 20Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
80 92Right-handed alpha
Helix 4
4
A
93 95Right-handed 310
Helix 5
5
A
98 112Right-handed alpha
Helix 6
6
A
113 117Right-handed 310
Helix 7
7
A
118 136Right-handed alpha
Helix 8
8
B
306 320Right-handed alpha
Helix 9
9
B
348 350Right-handed 310
Helix 10
10
B
351 363Right-handed alpha
Helix 11
11
B
380 392Right-handed alpha
Helix 12
12
B
399 410Right-handed alpha
Helix 13
13
B
411 417Right-handed alpha
Helix 14
14
B
418 436Right-handed alpha
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There are 2 sheets in PDB entry 1U0D. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
66 70anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 329first strand
Strand 2
B
337 347anti-parallel
Strand 3
B
374 378anti-parallel
Strand 4
B
366 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il