Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0F entry

There are 2 chains in PDB entry 1U0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 556
B
 ALA 1LEU 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 1U0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 6Right-handed alpha
Helix 2
2
A
6 20Right-handed alpha
Helix 3
3
A
21 23Right-handed 310
Helix 4
4
A
24 32Right-handed alpha
Helix 5
5
A
34 39Right-handed alpha
Helix 6
6
A
60 74Right-handed alpha
Helix 7
7
A
75 85Right-handed alpha
Helix 8
8
A
98 103Right-handed alpha
Helix 9
9
A
117 137Right-handed alpha
Helix 10
10
A
156 159Right-handed 310
Helix 11
11
A
160 170Right-handed alpha
Helix 12
12
A
171 175Right-handed 310
Helix 13
13
A
187 197Right-handed alpha
Helix 14
14
A
198 201Right-handed 310
Helix 15
15
A
214 233Right-handed alpha
Helix 16
16
A
234 236Right-handed 310
Helix 17
17
A
237 241Right-handed alpha
Helix 18
18
A
248 256Right-handed alpha
Helix 19
19
A
258 260Right-handed 310
Helix 20
20
A
270 274Right-handed 310
Helix 21
21
A
277 279Right-handed 310
Helix 22
22
A
280 288Right-handed alpha
Helix 23
23
A
288 309Right-handed alpha
Helix 24
24
A
310 313Right-handed 310
Helix 25
25
A
314 329Right-handed alpha
Helix 26
26
A
341 345Right-handed 310
Helix 27
27
A
346 360Right-handed alpha
Helix 28
28
A
384 389Right-handed 310
Helix 29
29
A
390 397Right-handed alpha
Helix 30
30
A
415 417Right-handed 310
Helix 31
31
A
418 438Right-handed alpha
Helix 32
32
A
440 451Right-handed alpha
Helix 33
33
A
454 462Right-handed alpha
Helix 34
34
A
463 466Right-handed 310
Helix 35
35
A
482 505Right-handed alpha
Helix 36
36
A
511 513Right-handed 310
Helix 37
37
A
514 529Right-handed alpha
Helix 38
38
A
538 552Right-handed alpha
Helix 39
39
B
1 6Right-handed alpha
Helix 40
40
B
6 20Right-handed alpha
Helix 41
41
B
21 23Right-handed 310
Helix 42
42
B
24 32Right-handed alpha
Helix 43
43
B
34 39Right-handed alpha
Helix 44
44
B
60 74Right-handed alpha
Helix 45
45
B
75 86Right-handed alpha
Helix 46
46
B
98 103Right-handed alpha
Helix 47
47
B
117 138Right-handed alpha
Helix 48
48
B
156 159Right-handed 310
Helix 49
49
B
160 170Right-handed alpha
Helix 50
50
B
171 174Right-handed 310
Helix 51
51
B
187 196Right-handed alpha
Helix 52
52
B
214 233Right-handed alpha
Helix 53
53
B
234 240Right-handed 310
Helix 54
54
B
248 256Right-handed alpha
Helix 55
55
B
258 260Right-handed 310
Helix 56
56
B
270 274Right-handed 310
Helix 57
57
B
277 279Right-handed 310
Helix 58
58
B
280 288Right-handed alpha
Helix 59
59
B
288 309Right-handed alpha
Helix 60
60
B
310 313Right-handed 310
Helix 61
61
B
314 329Right-handed alpha
Helix 62
62
B
341 345Right-handed 310
Helix 63
63
B
346 360Right-handed alpha
Helix 64
64
B
384 389Right-handed 310
Helix 65
65
B
390 397Right-handed alpha
Helix 66
66
B
415 417Right-handed 310
Helix 67
67
B
418 438Right-handed alpha
Helix 68
68
B
440 451Right-handed alpha
Helix 69
69
B
454 466Right-handed alpha
Helix 70
70
B
482 505Right-handed alpha
Helix 71
71
B
511 513Right-handed 310
Helix 72
72
B
514 529Right-handed alpha
Helix 73
73
B
538 552Right-handed alpha
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There are 6 sheets in PDB entry 1U0F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
473 480anti-parallel
Strand 4
A
403 410parallel
Strand 5
A
334 339parallel
Strand 6
A
377 379parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
115 116anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
150 154parallel
Strand 3
A
203 208parallel
Strand 4
A
242 246parallel
Strand 5
A
262 264parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
473 480anti-parallel
Strand 4
B
403 410parallel
Strand 5
B
334 339parallel
Strand 6
B
377 379parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
115 116anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
150 154parallel
Strand 3
B
203 208parallel
Strand 4
B
242 245parallel
Strand 5
B
262 263parallel
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