Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0J entry

There is 1 chain in PDB entry 1U0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 224GLY 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1U0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
224 235Right-handed alpha
Helix 2
2
A
238 255Right-handed alpha
Helix 3
3
A
259 278Right-handed alpha
Helix 4
4
A
279 285Right-handed alpha
Helix 5
5
A
292 295Right-handed 310
Helix 6
6
A
296 305Right-handed alpha
Helix 7
7
A
308 321Right-handed alpha
Helix 8
8
A
339 351Right-handed alpha
Helix 9
9
A
366 370Right-handed 310
Helix 10
10
A
386 395Right-handed alpha
Helix 11
11
A
437 443Right-handed alpha
Helix 12
12
A
462 476Right-handed alpha
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There are 3 sheets in PDB entry 1U0J. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
374 377parallel
Strand 3
A
416 420parallel
Strand 4
A
329 333parallel
Strand 5
A
445 449parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
427 429parallel
Strand 3
A
432 434anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
410 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il