Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0M entry

There are 2 chains in PDB entry 1U0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 349
B
 ALA 2ALA 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1U0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
55 60Right-handed alpha
Helix 4
4
A
64 92Right-handed alpha
Helix 5
5
A
94 98Right-handed 310
Helix 6
6
A
113 122Right-handed alpha
Helix 7
7
A
136 138Right-handed 310
Helix 8
8
A
139 155Right-handed alpha
Helix 9
9
A
169 172Right-handed 310
Helix 10
10
A
178 188Right-handed alpha
Helix 11
11
A
239 241Right-handed 310
Helix 12
12
A
242 256Right-handed alpha
Helix 13
13
A
272 284Right-handed alpha
Helix 14
14
A
287 290Right-handed 310
Helix 15
15
A
291 301Right-handed alpha
Helix 16
16
A
306 319Right-handed alpha
Helix 17
17
B
18 29Right-handed alpha
Helix 18
18
B
34 45Right-handed alpha
Helix 19
19
B
55 61Right-handed alpha
Helix 20
20
B
64 91Right-handed alpha
Helix 21
21
B
94 98Right-handed 310
Helix 22
22
B
113 122Right-handed alpha
Helix 23
23
B
136 138Right-handed 310
Helix 24
24
B
139 155Right-handed alpha
Helix 25
25
B
169 172Right-handed 310
Helix 26
26
B
178 188Right-handed alpha
Helix 27
27
B
239 241Right-handed 310
Helix 28
28
B
242 256Right-handed alpha
Helix 29
29
B
273 284Right-handed alpha
Helix 30
30
B
287 290Right-handed 310
Helix 31
31
B
291 302Right-handed alpha
Helix 32
32
B
304 306Right-handed 310
Helix 33
33
B
307 320Right-handed alpha
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There are 9 sheets in PDB entry 1U0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
159 167anti-parallel
Strand 4
A
100 104parallel
Strand 5
A
129 133parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
3 4anti-parallel
Strand 4
A
204 214anti-parallel
Strand 5
A
338 347anti-parallel
Strand 6
A
329 334anti-parallel
Strand 7
A
268 270parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
49 52anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
230 235anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
190 198anti-parallel
Strand 3
B
159 167anti-parallel
Strand 4
B
100 104parallel
Strand 5
B
129 133parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
190 198anti-parallel
Strand 3
B
3 5anti-parallel
Strand 4
B
204 206anti-parallel
Strand 5
B
345 347anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
49 52anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
338 343anti-parallel
Strand 3
B
329 334anti-parallel
Strand 4
B
267 270parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
230 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il