Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0O entry

There are 3 chains in PDB entry 1U0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1PRO 133
B
 ASP 201ALA 325
C
 PHE 507PRO 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1U0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 31Right-handed alpha
Helix 2
2
A
46 60Right-handed alpha
Helix 3
3
A
108 113Right-handed alpha
Helix 4
4
B
222 232Right-handed alpha
Helix 5
5
B
244 255Right-handed alpha
Helix 6
6
B
286 291Right-handed 310
Helix 7
7
C
526 542Right-handed alpha
Helix 8
8
C
573 583Right-handed alpha
Helix 9
9
C
593 604Right-handed alpha
Helix 10
10
C
627 632Right-handed alpha
Helix 11
11
C
633 644Right-handed alpha
Helix 12
12
C
658 668Right-handed alpha
Helix 13
13
C
679 696Right-handed alpha
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There are 5 sheets in PDB entry 1U0O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
38 39anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
66 73anti-parallel
Strand 4
B
277 279anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
212 221anti-parallel
Strand 3
B
317 323anti-parallel
Strand 4
B
238 239anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
212 221anti-parallel
Strand 3
B
317 323anti-parallel
Strand 4
B
264 265parallel
Strand 5
B
297 302anti-parallel
Strand 6
B
307 312anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
562 566first strand
Strand 2
C
551 558anti-parallel
Strand 3
C
513 520parallel
Strand 4
C
615 622parallel
Strand 5
C
646 653parallel
Strand 6
C
675 677parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il