Analysis of interatomic Contacts of Structural Units in PDB entry:
1U0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U0T entry

There are 2 chains in PDB entry 1U0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5GLY 306
B
 ARG 5LYS 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1U0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
19 31Right-handed alpha
Helix 3
3
A
84 99Right-handed alpha
Helix 4
4
A
120 131Right-handed alpha
Helix 5
5
A
196 200Right-handed 310
Helix 6
6
A
201 206Right-handed alpha
Helix 7
7
A
288 298Right-handed alpha
Helix 8
8
B
13 17Right-handed 310
Helix 9
9
B
19 32Right-handed alpha
Helix 10
10
B
84 99Right-handed alpha
Helix 11
11
B
120 131Right-handed alpha
Helix 12
12
B
196 200Right-handed 310
Helix 13
13
B
201 206Right-handed alpha
Helix 14
14
B
288 298Right-handed alpha
Helix 15
15
B
303 307Right-handed 310
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There are 8 sheets in PDB entry 1U0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
6 11parallel
Strand 3
A
79 83parallel
Strand 4
A
102 106parallel
Strand 5
A
116 117parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
279 283anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 157first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
269 274anti-parallel
Strand 4
A
241 245anti-parallel
Strand 5
A
172 177anti-parallel
Strand 6
A
182 188anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
252 256anti-parallel
Strand 3
A
160 164anti-parallel
Strand 4
A
190 194anti-parallel
Strand 5
A
218 223anti-parallel
Strand 6
A
233 235anti-parallel
Strand 7
B
210 211parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
B
233 235parallel
Strand 3
B
218 223anti-parallel
Strand 4
B
190 194anti-parallel
Strand 5
B
160 165anti-parallel
Strand 6
B
252 256anti-parallel
Strand 7
B
260 264anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
6 11parallel
Strand 3
B
78 82parallel
Strand 4
B
101 106parallel
Strand 5
B
116 117parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
6 11parallel
Strand 3
B
78 82parallel
Strand 4
B
101 106parallel
Strand 5
B
279 283parallel
Strand 6
B
134 138anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 157first strand
Strand 2
B
141 147anti-parallel
Strand 3
B
269 274anti-parallel
Strand 4
B
241 245anti-parallel
Strand 5
B
172 177anti-parallel
Strand 6
B
182 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il