Analysis of interatomic Contacts of Structural Units in PDB entry:
1U60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U60 entry

There are 4 chains in PDB entry 1U60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLY 310
B
 LEU 2GLY 310
C
 LEU 2GLY 310
D
 LEU 2GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 1U60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
30 35Right-handed alpha
Helix 3
3
A
67 81Right-handed alpha
Helix 4
4
A
81 89Right-handed alpha
Helix 5
5
A
100 107Right-handed alpha
Helix 6
6
A
116 127Right-handed alpha
Helix 7
7
A
131 148Right-handed alpha
Helix 8
8
A
154 163Right-handed alpha
Helix 9
9
A
165 179Right-handed alpha
Helix 10
10
A
184 196Right-handed alpha
Helix 11
11
A
201 214Right-handed alpha
Helix 12
12
A
227 229Right-handed 310
Helix 13
13
A
230 242Right-handed alpha
Helix 14
14
A
243 245Right-handed 310
Helix 15
15
A
246 254Right-handed alpha
Helix 16
16
A
289 304Right-handed alpha
Helix 17
17
B
3 19Right-handed alpha
Helix 18
18
B
30 35Right-handed alpha
Helix 19
19
B
67 81Right-handed alpha
Helix 20
20
B
81 89Right-handed alpha
Helix 21
21
B
100 106Right-handed alpha
Helix 22
22
B
116 127Right-handed alpha
Helix 23
23
B
131 148Right-handed alpha
Helix 24
24
B
154 163Right-handed alpha
Helix 25
25
B
165 179Right-handed alpha
Helix 26
26
B
184 196Right-handed alpha
Helix 27
27
B
201 214Right-handed alpha
Helix 28
28
B
227 229Right-handed 310
Helix 29
29
B
230 242Right-handed alpha
Helix 30
30
B
243 245Right-handed 310
Helix 31
31
B
246 254Right-handed alpha
Helix 32
32
B
289 304Right-handed alpha
Helix 33
33
C
3 19Right-handed alpha
Helix 34
34
C
30 35Right-handed alpha
Helix 35
35
C
67 81Right-handed alpha
Helix 36
36
C
81 89Right-handed alpha
Helix 37
37
C
100 106Right-handed alpha
Helix 38
38
C
116 127Right-handed alpha
Helix 39
39
C
131 148Right-handed alpha
Helix 40
40
C
154 163Right-handed alpha
Helix 41
41
C
165 179Right-handed alpha
Helix 42
42
C
184 197Right-handed alpha
Helix 43
43
C
201 214Right-handed alpha
Helix 44
44
C
227 229Right-handed 310
Helix 45
45
C
230 242Right-handed alpha
Helix 46
46
C
243 245Right-handed 310
Helix 47
47
C
246 254Right-handed alpha
Helix 48
48
C
289 304Right-handed alpha
Helix 49
49
D
3 19Right-handed alpha
Helix 50
50
D
30 35Right-handed alpha
Helix 51
51
D
67 81Right-handed alpha
Helix 52
52
D
81 89Right-handed alpha
Helix 53
53
D
100 107Right-handed alpha
Helix 54
54
D
116 127Right-handed alpha
Helix 55
55
D
131 148Right-handed alpha
Helix 56
56
D
154 163Right-handed alpha
Helix 57
57
D
165 179Right-handed alpha
Helix 58
58
D
184 197Right-handed alpha
Helix 59
59
D
201 214Right-handed alpha
Helix 60
60
D
227 229Right-handed 310
Helix 61
61
D
230 242Right-handed alpha
Helix 62
62
D
243 245Right-handed 310
Helix 63
63
D
246 254Right-handed alpha
Helix 64
64
D
289 304Right-handed alpha
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There are 10 sheets in PDB entry 1U60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
274 279anti-parallel
Strand 4
A
265 270anti-parallel
Strand 5
A
258 260anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
198 200anti-parallel
Strand 3
A
152 153anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
223 224anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
274 279anti-parallel
Strand 4
B
265 270anti-parallel
Strand 5
B
258 260anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
198 200anti-parallel
Strand 3
B
152 153anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
42 47anti-parallel
Strand 3
C
274 279anti-parallel
Strand 4
C
265 270anti-parallel
Strand 5
C
258 260anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
198 200anti-parallel
Strand 3
C
152 153anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
42 47anti-parallel
Strand 3
D
274 279anti-parallel
Strand 4
D
265 270anti-parallel
Strand 5
D
258 260anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 63first strand
Strand 2
D
198 200anti-parallel
Strand 3
D
152 153anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 218first strand
Strand 2
D
223 224anti-parallel
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