Analysis of interatomic Contacts of Structural Units in PDB entry:
1U6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1U6J entry

There are 12 chains in PDB entry 1U6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLU 283
B	THR 2	GLU 283
C	THR 2	GLU 283
D	THR 2	GLU 283
E	THR 2	GLU 283
F	THR 2	GLU 283
G	THR 2	GLU 283
H	THR 2	GLU 283
I	THR 2	GLU 283
J	THR 2	GLU 283
K	THR 2	GLU 283
L	THR 2	GLU 283

There are137 helices in PDB entry 1U6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	24	Right-handed alpha
Helix 2	2	A	45	64	Right-handed alpha
Helix 3	3	A	77	89	Right-handed alpha
Helix 4	4	A	99	104	Right-handed 310
Helix 5	5	A	105	111	Right-handed alpha
Helix 6	6	A	133	151	Right-handed alpha
Helix 7	7	A	152	170	Right-handed alpha
Helix 8	8	A	174	178	Right-handed 310
Helix 9	9	A	184	191	Right-handed 310
Helix 10	10	A	196	223	Right-handed alpha
Helix 11	11	A	226	258	Right-handed alpha
Helix 12	12	B	14	20	Right-handed alpha
Helix 13	13	B	21	25	Right-handed 310
Helix 14	14	B	45	64	Right-handed alpha
Helix 15	15	B	77	89	Right-handed alpha
Helix 16	16	B	99	104	Right-handed 310
Helix 17	17	B	105	112	Right-handed alpha
Helix 18	18	B	133	151	Right-handed alpha
Helix 19	19	B	152	170	Right-handed alpha
Helix 20	20	B	174	178	Right-handed 310
Helix 21	21	B	184	191	Right-handed 310
Helix 22	22	B	196	223	Right-handed alpha
Helix 23	23	B	226	258	Right-handed alpha
Helix 24	24	C	19	24	Right-handed 310
Helix 25	25	C	45	64	Right-handed alpha
Helix 26	26	C	77	89	Right-handed alpha
Helix 27	27	C	99	104	Right-handed 310
Helix 28	28	C	105	112	Right-handed alpha
Helix 29	29	C	133	151	Right-handed alpha
Helix 30	30	C	152	169	Right-handed alpha
Helix 31	31	C	174	178	Right-handed 310
Helix 32	32	C	184	190	Right-handed 310
Helix 33	33	C	196	223	Right-handed alpha
Helix 34	34	C	226	258	Right-handed alpha
Helix 35	35	D	14	20	Right-handed alpha
Helix 36	36	D	21	25	Right-handed 310
Helix 37	37	D	45	64	Right-handed alpha
Helix 38	38	D	77	90	Right-handed alpha
Helix 39	39	D	99	104	Right-handed 310
Helix 40	40	D	105	113	Right-handed alpha
Helix 41	41	D	133	151	Right-handed alpha
Helix 42	42	D	153	168	Right-handed alpha
Helix 43	43	D	169	171	Right-handed 310
Helix 44	44	D	174	178	Right-handed 310
Helix 45	45	D	184	191	Right-handed 310
Helix 46	46	D	196	222	Right-handed alpha
Helix 47	47	D	226	259	Right-handed alpha
Helix 48	48	E	14	20	Right-handed alpha
Helix 49	49	E	45	64	Right-handed alpha
Helix 50	50	E	77	90	Right-handed alpha
Helix 51	51	E	99	104	Right-handed 310
Helix 52	52	E	105	113	Right-handed alpha
Helix 53	53	E	133	151	Right-handed alpha
Helix 54	54	E	152	169	Right-handed alpha
Helix 55	55	E	184	191	Right-handed 310
Helix 56	56	E	196	222	Right-handed alpha
Helix 57	57	E	226	258	Right-handed alpha
Helix 58	58	F	14	20	Right-handed alpha
Helix 59	59	F	21	25	Right-handed 310
Helix 60	60	F	45	64	Right-handed alpha
Helix 61	61	F	77	89	Right-handed alpha
Helix 62	62	F	101	104	Right-handed 310
Helix 63	63	F	105	112	Right-handed alpha
Helix 64	64	F	133	151	Right-handed alpha
Helix 65	65	F	152	169	Right-handed alpha
Helix 66	66	F	184	190	Right-handed 310
Helix 67	67	F	196	223	Right-handed alpha
Helix 68	68	F	226	258	Right-handed alpha
Helix 69	69	G	14	24	Right-handed alpha
Helix 70	70	G	45	64	Right-handed alpha
Helix 71	71	G	77	89	Right-handed alpha
Helix 72	72	G	99	104	Right-handed 310
Helix 73	73	G	105	111	Right-handed alpha
Helix 74	74	G	133	151	Right-handed alpha
Helix 75	75	G	152	170	Right-handed alpha
Helix 76	76	G	174	178	Right-handed 310
Helix 77	77	G	184	191	Right-handed 310
Helix 78	78	G	196	223	Right-handed alpha
Helix 79	79	G	226	258	Right-handed alpha
Helix 80	80	H	14	20	Right-handed alpha
Helix 81	81	H	21	25	Right-handed 310
Helix 82	82	H	45	64	Right-handed alpha
Helix 83	83	H	77	89	Right-handed alpha
Helix 84	84	H	99	104	Right-handed 310
Helix 85	85	H	105	112	Right-handed alpha
Helix 86	86	H	133	151	Right-handed alpha
Helix 87	87	H	152	170	Right-handed alpha
Helix 88	88	H	174	178	Right-handed 310
Helix 89	89	H	184	191	Right-handed 310
Helix 90	90	H	196	223	Right-handed alpha
Helix 91	91	H	226	258	Right-handed alpha
Helix 92	92	I	19	24	Right-handed 310
Helix 93	93	I	45	64	Right-handed alpha
Helix 94	94	I	77	89	Right-handed alpha
Helix 95	95	I	99	104	Right-handed 310
Helix 96	96	I	105	112	Right-handed alpha
Helix 97	97	I	133	151	Right-handed alpha
Helix 98	98	I	152	169	Right-handed alpha
Helix 99	99	I	174	178	Right-handed 310
Helix 100	100	I	184	190	Right-handed 310
Helix 101	101	I	196	223	Right-handed alpha
Helix 102	102	I	226	258	Right-handed alpha
Helix 103	103	J	14	20	Right-handed alpha
Helix 104	104	J	21	25	Right-handed 310
Helix 105	105	J	45	64	Right-handed alpha
Helix 106	106	J	77	90	Right-handed alpha
Helix 107	107	J	99	104	Right-handed 310
Helix 108	108	J	105	113	Right-handed alpha
Helix 109	109	J	133	151	Right-handed alpha
Helix 110	110	J	153	168	Right-handed alpha
Helix 111	111	J	169	171	Right-handed 310
Helix 112	112	J	174	178	Right-handed 310
Helix 113	113	J	184	191	Right-handed 310
Helix 114	114	J	196	222	Right-handed alpha
Helix 115	115	J	226	257	Right-handed alpha
Helix 116	116	K	14	20	Right-handed alpha
Helix 117	117	K	45	64	Right-handed alpha
Helix 118	118	K	77	90	Right-handed alpha
Helix 119	119	K	99	104	Right-handed 310
Helix 120	120	K	105	113	Right-handed alpha
Helix 121	121	K	133	152	Right-handed alpha
Helix 122	122	K	152	169	Right-handed alpha
Helix 123	123	K	184	191	Right-handed 310
Helix 124	124	K	196	222	Right-handed alpha
Helix 125	125	K	226	258	Right-handed alpha
Helix 126	126	L	21	25	Right-handed 310
Helix 127	127	L	45	60	Right-handed alpha
Helix 128	128	L	77	88	Right-handed alpha
Helix 129	129	L	100	104	Right-handed 310
Helix 130	130	L	106	112	Right-handed alpha
Helix 131	131	L	133	151	Right-handed alpha
Helix 132	132	L	152	162	Right-handed alpha
Helix 133	133	L	162	167	Right-handed alpha
Helix 134	134	L	174	178	Right-handed 310
Helix 135	135	L	184	190	Right-handed 310
Helix 136	136	L	196	223	Right-handed alpha
Helix 137	137	L	226	258	Right-handed alpha

There are 6 sheets in PDB entry 1U6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	115	119	parallel
Strand 3	A	94	98	parallel
Strand 4	A	67	71	parallel
Strand 5	A	4	11	parallel
Strand 6	A	33	41	parallel
Strand 7	B	33	39	anti-parallel
Strand 8	B	4	10	parallel
Strand 9	B	67	71	parallel
Strand 10	B	94	98	parallel
Strand 11	B	115	119	parallel
Strand 12	B	180	183	parallel

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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	115	119	parallel
Strand 3	C	94	98	parallel
Strand 4	C	67	71	parallel
Strand 5	C	4	11	parallel
Strand 6	C	33	41	parallel
Strand 7	D	33	41	anti-parallel
Strand 8	D	4	11	parallel
Strand 9	D	67	71	parallel
Strand 10	D	94	98	parallel
Strand 11	D	115	119	parallel
Strand 12	D	180	183	parallel

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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	183	first strand
Strand 2	E	115	119	parallel
Strand 3	E	94	98	parallel
Strand 4	E	67	71	parallel
Strand 5	E	4	11	parallel
Strand 6	E	33	41	parallel
Strand 7	F	33	41	anti-parallel
Strand 8	F	4	11	parallel
Strand 9	F	67	71	parallel
Strand 10	F	94	99	parallel
Strand 11	F	115	119	parallel
Strand 12	F	180	183	parallel

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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	183	first strand
Strand 2	G	115	119	parallel
Strand 3	G	94	98	parallel
Strand 4	G	67	71	parallel
Strand 5	G	4	11	parallel
Strand 6	G	33	41	parallel
Strand 7	H	33	39	anti-parallel
Strand 8	H	4	10	parallel
Strand 9	H	67	71	parallel
Strand 10	H	94	98	parallel
Strand 11	H	115	119	parallel
Strand 12	H	180	183	parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	180	183	first strand
Strand 2	I	115	119	parallel
Strand 3	I	94	98	parallel
Strand 4	I	67	71	parallel
Strand 5	I	4	11	parallel
Strand 6	I	33	41	parallel
Strand 7	J	33	41	anti-parallel
Strand 8	J	4	11	parallel
Strand 9	J	67	71	parallel
Strand 10	J	94	98	parallel
Strand 11	J	115	119	parallel
Strand 12	J	180	183	parallel

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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	180	183	first strand
Strand 2	K	115	119	parallel
Strand 3	K	94	98	parallel
Strand 4	K	67	71	parallel
Strand 5	K	4	11	parallel
Strand 6	K	33	41	parallel
Strand 7	L	33	41	anti-parallel
Strand 8	L	4	11	parallel
Strand 9	L	67	71	parallel
Strand 10	L	94	98	parallel
Strand 11	L	115	119	parallel
Strand 12	L	180	183	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1U6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1U6J