Analysis of interatomic Contacts of Structural Units in PDB entry:
1U7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U7F entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 1U7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 228SER 422
A
 VAL 424VAL 424
B
 ILE 314ALA 546
C
 ALA 230SER 422
C
 VAL 424VAL 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 1U7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
272 274Right-handed 310
Helix 2
2
A
280 287Right-handed alpha
Helix 3
3
A
288 290Right-handed 310
Helix 4
4
A
317 324Right-handed alpha
Helix 5
5
A
345 354Right-handed alpha
Helix 6
6
A
355 358Right-handed 310
Helix 7
7
A
359 365Right-handed alpha
Helix 8
8
A
366 369Right-handed 310
Helix 9
9
A
388 392Right-handed 310
Helix 10
10
A
401 412Right-handed alpha
Helix 11
11
B
365 367Right-handed 310
Helix 12
12
B
373 382Right-handed alpha
Helix 13
13
B
412 417Right-handed alpha
Helix 14
14
B
439 455Right-handed alpha
Helix 15
15
B
491 496Right-handed alpha
Helix 16
16
B
517 521Right-handed 310
Helix 17
17
B
529 541Right-handed alpha
Helix 18
18
C
280 288Right-handed alpha
Helix 19
19
C
317 322Right-handed alpha
Helix 20
20
C
345 354Right-handed alpha
Helix 21
21
C
359 365Right-handed alpha
Helix 22
22
C
366 369Right-handed 310
Helix 23
23
C
388 392Right-handed 310
Helix 24
24
C
401 412Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1U7F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
395 400anti-parallel
Strand 4
A
371 376anti-parallel
Strand 5
A
313 316anti-parallel
Strand 6
A
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
254 258parallel
Strand 3
A
294 299anti-parallel
Strand 4
A
302 307anti-parallel
Strand 5
A
339 344anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 342first strand
Strand 2
B
322 329anti-parallel
Strand 3
B
524 528anti-parallel
Strand 4
B
500 505anti-parallel
Strand 5
B
407 410anti-parallel
Strand 6
B
427 429anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 363first strand
Strand 2
B
347 351parallel
Strand 3
B
387 391anti-parallel
Strand 4
B
397 400anti-parallel
Strand 5
B
434 438anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 243first strand
Strand 2
C
233 239anti-parallel
Strand 3
C
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 243first strand
Strand 2
C
233 239anti-parallel
Strand 3
C
395 400anti-parallel
Strand 4
C
371 376anti-parallel
Strand 5
C
313 316anti-parallel
Strand 6
C
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 270first strand
Strand 2
C
254 258parallel
Strand 3
C
294 299anti-parallel
Strand 4
C
302 307anti-parallel
Strand 5
C
339 344anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il