Analysis of interatomic Contacts of Structural Units in PDB entry:
1U8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1U8R entry

There are 12 chains in PDB entry 1U8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	C 1	G 33
F	C 1	C 33
K	C 1	G 33
L	C 1	C 33
A	MET 1	VAL 230
B	MET 1	VAL 230
C	MET 1	VAL 230
D	MET 1	VAL 230
G	MET 1	VAL 230
H	MET 1	VAL 230
I	MET 1	VAL 230
J	MET 1	VAL 230

There are 83 helices in PDB entry 1U8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	22	Right-handed alpha
Helix 2	2	A	26	35	Right-handed alpha
Helix 3	3	A	37	51	Right-handed alpha
Helix 4	4	A	65	89	Right-handed alpha
Helix 5	5	A	93	105	Right-handed alpha
Helix 6	6	A	109	120	Right-handed alpha
Helix 7	7	A	134	139	Right-handed alpha
Helix 8	8	A	155	157	Right-handed 310
Helix 9	9	A	171	177	Right-handed alpha
Helix 10	10	A	177	187	Right-handed alpha
Helix 11	11	A	218	224	Right-handed alpha
Helix 12	12	B	6	22	Right-handed alpha
Helix 13	13	B	26	35	Right-handed alpha
Helix 14	14	B	37	51	Right-handed alpha
Helix 15	15	B	65	89	Right-handed alpha
Helix 16	16	B	93	105	Right-handed alpha
Helix 17	17	B	109	120	Right-handed alpha
Helix 18	18	B	155	157	Right-handed 310
Helix 19	19	B	171	177	Right-handed alpha
Helix 20	20	B	177	187	Right-handed alpha
Helix 21	21	B	218	223	Right-handed alpha
Helix 22	22	C	6	22	Right-handed alpha
Helix 23	23	C	26	34	Right-handed alpha
Helix 24	24	C	37	51	Right-handed alpha
Helix 25	25	C	65	89	Right-handed alpha
Helix 26	26	C	93	105	Right-handed alpha
Helix 27	27	C	109	120	Right-handed alpha
Helix 28	28	C	134	139	Right-handed alpha
Helix 29	29	C	155	157	Right-handed 310
Helix 30	30	C	171	177	Right-handed alpha
Helix 31	31	C	177	187	Right-handed alpha
Helix 32	32	C	218	224	Right-handed alpha
Helix 33	33	D	6	22	Right-handed alpha
Helix 34	34	D	26	35	Right-handed alpha
Helix 35	35	D	37	51	Right-handed alpha
Helix 36	36	D	65	89	Right-handed alpha
Helix 37	37	D	93	105	Right-handed alpha
Helix 38	38	D	109	120	Right-handed alpha
Helix 39	39	D	155	157	Right-handed 310
Helix 40	40	D	171	177	Right-handed alpha
Helix 41	41	D	177	187	Right-handed alpha
Helix 42	42	D	218	223	Right-handed alpha
Helix 43	43	G	6	22	Right-handed alpha
Helix 44	44	G	26	35	Right-handed alpha
Helix 45	45	G	37	51	Right-handed alpha
Helix 46	46	G	65	89	Right-handed alpha
Helix 47	47	G	93	105	Right-handed alpha
Helix 48	48	G	109	120	Right-handed alpha
Helix 49	49	G	134	139	Right-handed alpha
Helix 50	50	G	155	157	Right-handed 310
Helix 51	51	G	171	177	Right-handed alpha
Helix 52	52	G	177	187	Right-handed alpha
Helix 53	53	G	218	224	Right-handed alpha
Helix 54	54	H	6	22	Right-handed alpha
Helix 55	55	H	26	35	Right-handed alpha
Helix 56	56	H	37	51	Right-handed alpha
Helix 57	57	H	65	89	Right-handed alpha
Helix 58	58	H	93	105	Right-handed alpha
Helix 59	59	H	109	120	Right-handed alpha
Helix 60	60	H	155	157	Right-handed 310
Helix 61	61	H	171	177	Right-handed alpha
Helix 62	62	H	177	187	Right-handed alpha
Helix 63	63	H	218	223	Right-handed alpha
Helix 64	64	I	6	22	Right-handed alpha
Helix 65	65	I	26	35	Right-handed alpha
Helix 66	66	I	37	51	Right-handed alpha
Helix 67	67	I	65	89	Right-handed alpha
Helix 68	68	I	93	105	Right-handed alpha
Helix 69	69	I	109	120	Right-handed alpha
Helix 70	70	I	155	157	Right-handed 310
Helix 71	71	I	171	177	Right-handed alpha
Helix 72	72	I	177	187	Right-handed alpha
Helix 73	73	I	218	224	Right-handed alpha
Helix 74	74	J	6	22	Right-handed alpha
Helix 75	75	J	26	35	Right-handed alpha
Helix 76	76	J	37	51	Right-handed alpha
Helix 77	77	J	65	89	Right-handed alpha
Helix 78	78	J	93	105	Right-handed alpha
Helix 79	79	J	109	120	Right-handed alpha
Helix 80	80	J	155	157	Right-handed 310
Helix 81	81	J	171	177	Right-handed alpha
Helix 82	82	J	177	187	Right-handed alpha
Helix 83	83	J	218	224	Right-handed alpha

There are 16 sheets in PDB entry 1U8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	62	64	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	225	229	anti-parallel
Strand 3	A	163	170	anti-parallel
Strand 4	A	194	199	anti-parallel
Strand 5	A	205	208	anti-parallel
Strand 6	A	215	217	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	62	64	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	225	229	anti-parallel
Strand 3	B	163	170	anti-parallel
Strand 4	B	194	199	anti-parallel
Strand 5	B	205	208	anti-parallel
Strand 6	B	215	217	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	62	64	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	225	229	anti-parallel
Strand 3	C	163	170	anti-parallel
Strand 4	C	194	199	anti-parallel
Strand 5	C	205	208	anti-parallel
Strand 6	C	215	217	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	62	64	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	225	229	anti-parallel
Strand 3	D	163	170	anti-parallel
Strand 4	D	194	199	anti-parallel
Strand 5	D	205	208	anti-parallel
Strand 6	D	215	217	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	56	first strand
Strand 2	G	62	64	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	225	229	anti-parallel
Strand 3	G	163	170	anti-parallel
Strand 4	G	194	199	anti-parallel
Strand 5	G	205	208	anti-parallel
Strand 6	G	215	217	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	56	first strand
Strand 2	H	62	64	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	225	229	anti-parallel
Strand 3	H	163	170	anti-parallel
Strand 4	H	194	199	anti-parallel
Strand 5	H	205	208	anti-parallel
Strand 6	H	215	217	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	54	56	first strand
Strand 2	I	62	64	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	152	153	first strand
Strand 2	I	225	229	anti-parallel
Strand 3	I	163	170	anti-parallel
Strand 4	I	194	199	anti-parallel
Strand 5	I	205	208	anti-parallel
Strand 6	I	215	217	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	56	first strand
Strand 2	J	62	64	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	152	153	first strand
Strand 2	J	225	229	anti-parallel
Strand 3	J	163	170	anti-parallel
Strand 4	J	194	199	anti-parallel
Strand 5	J	205	208	anti-parallel
Strand 6	J	215	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1U8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
1U8R