Analysis of interatomic Contacts of Structural Units in PDB entry:
1U8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U8Y entry

There are 2 chains in PDB entry 1U8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ARG 178
B
 SER 11ARG 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1U8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 37Right-handed alpha
Helix 2
2
A
97 103Right-handed alpha
Helix 3
3
A
103 116Right-handed alpha
Helix 4
4
A
128 135Right-handed 310
Helix 5
5
A
138 150Right-handed alpha
Helix 6
6
A
163 177Right-handed alpha
Helix 7
7
B
26 37Right-handed alpha
Helix 8
8
B
79 86Right-handed alpha
Helix 9
9
B
97 116Right-handed alpha
Helix 10
10
B
128 135Right-handed 310
Helix 11
11
B
138 150Right-handed alpha
Helix 12
12
B
163 177Right-handed alpha
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There are 2 sheets in PDB entry 1U8Y. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
60 68anti-parallel
Strand 3
A
14 20parallel
Strand 4
A
88 94parallel
Strand 5
A
122 127parallel
Strand 6
A
153 155parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
60 68anti-parallel
Strand 3
B
14 20parallel
Strand 4
B
88 94parallel
Strand 5
B
122 127parallel
Strand 6
B
152 155parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il