Analysis of interatomic Contacts of Structural Units in PDB entry:
1UAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UAD entry

There are 4 chains in PDB entry 1UAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11SER 183
B
 SER 11SER 183
C
 SER 4PRO 95
D
 SER 4PRO 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1UAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 37Right-handed alpha
Helix 2
2
A
76 86Right-handed alpha
Helix 3
3
A
97 116Right-handed alpha
Helix 4
4
A
131 135Right-handed 310
Helix 5
5
A
138 150Right-handed alpha
Helix 6
6
A
163 182Right-handed alpha
Helix 7
7
B
26 37Right-handed alpha
Helix 8
8
B
76 86Right-handed alpha
Helix 9
9
B
97 116Right-handed alpha
Helix 10
10
B
128 135Right-handed 310
Helix 11
11
B
138 150Right-handed alpha
Helix 12
12
B
163 180Right-handed alpha
Helix 13
13
C
34 36Right-handed 310
Helix 14
14
C
49 52Right-handed 310
Helix 15
15
D
34 36Right-handed 310
Helix 16
16
D
49 52Right-handed 310
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There are 8 sheets in PDB entry 1UAD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
122 127parallel
Strand 3
A
88 94parallel
Strand 4
A
14 20parallel
Strand 5
A
60 69parallel
Strand 6
A
48 57anti-parallel
Strand 7
C
9 14anti-parallel
Strand 8
C
23 29anti-parallel
Strand 9
C
59 63anti-parallel
Strand 10
C
53 56anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
122 127parallel
Strand 3
A
88 94parallel
Strand 4
A
14 20parallel
Strand 5
A
60 69parallel
Strand 6
A
48 57anti-parallel
Strand 7
C
9 14anti-parallel
Strand 8
C
85 86parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
122 127parallel
Strand 3
B
88 94parallel
Strand 4
B
14 20parallel
Strand 5
B
60 69parallel
Strand 6
B
48 57anti-parallel
Strand 7
D
9 14anti-parallel
Strand 8
D
23 29anti-parallel
Strand 9
D
59 63anti-parallel
Strand 10
D
53 56anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
122 127parallel
Strand 3
B
88 94parallel
Strand 4
B
14 20parallel
Strand 5
B
60 69parallel
Strand 6
B
48 57anti-parallel
Strand 7
D
9 14anti-parallel
Strand 8
D
85 86parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
91 92parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
38 43anti-parallel
Strand 3
C
74 78anti-parallel
Strand 4
C
82 83anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 18first strand
Strand 2
D
91 92parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
38 43anti-parallel
Strand 3
D
74 78anti-parallel
Strand 4
D
82 83anti-parallel
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