Analysis of interatomic Contacts of Structural Units in PDB entry:
1UAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UAM entry

There is 1 chain in PDB entry 1UAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1HIS 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1UAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 12Right-handed 310
Helix 2
2
A
13 18Right-handed alpha
Helix 3
3
A
19 28Right-handed alpha
Helix 4
4
A
37 42Right-handed 310
Helix 5
5
A
63 79Right-handed alpha
Helix 6
6
A
95 103Right-handed alpha
Helix 7
7
A
119 127Right-handed alpha
Helix 8
8
A
141 154Right-handed alpha
Helix 9
9
A
194 199Right-handed alpha
Helix 10
10
A
200 220Right-handed alpha
Helix 11
11
A
220 227Right-handed alpha
Helix 12
12
A
230 245Right-handed alpha
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There are 3 sheets in PDB entry 1UAM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
1 6parallel
Strand 3
A
107 111parallel
Strand 4
A
83 87parallel
Strand 5
A
129 132parallel
Strand 6
A
92 93parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
61 62anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il