Analysis of interatomic Contacts of Structural Units in PDB entry:
1UB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UB0 entry

There is 1 chain in PDB entry 1UB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1UB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
54 69Right-handed alpha
Helix 3
3
A
81 95Right-handed alpha
Helix 4
4
A
116 127Right-handed alpha
Helix 5
5
A
128 131Right-handed 310
Helix 6
6
A
137 146Right-handed alpha
Helix 7
7
A
151 164Right-handed alpha
Helix 8
8
A
207 222Right-handed alpha
Helix 9
9
A
225 243Right-handed alpha
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There are 2 sheets in PDB entry 1UB0. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
31 43anti-parallel
Strand 3
A
3 11parallel
Strand 4
A
73 76parallel
Strand 5
A
100 102parallel
Strand 6
A
133 134parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 176first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
191 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il