Analysis of interatomic Contacts of Structural Units in PDB entry:
1UB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UB5 entry

There are 4 chains in PDB entry 1UB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1GLU 214
L
 ASP 1PHE 214
A
 GLU 1GLU 214
B
 ASP 1PHE 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1UB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
28 34Right-handed 310
Helix 2
2
H
88 92Right-handed 310
Helix 3
3
H
187 191Right-handed 310
Helix 4
4
H
203 206Right-handed 310
Helix 5
5
L
84 88Right-handed 310
Helix 6
6
L
126 131Right-handed alpha
Helix 7
7
L
188 193Right-handed alpha
Helix 8
8
A
28 34Right-handed 310
Helix 9
9
A
88 92Right-handed 310
Helix 10
10
A
187 191Right-handed 310
Helix 11
11
A
203 206Right-handed 310
Helix 12
12
B
84 88Right-handed 310
Helix 13
13
B
126 131Right-handed alpha
Helix 14
14
B
188 193Right-handed alpha
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There are 23 sheets in PDB entry 1UB5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 60first strand
Strand 2
H
48 53anti-parallel
Strand 3
H
36 41anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
105 106anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 60first strand
Strand 2
H
48 53anti-parallel
Strand 3
H
36 41anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
110 114anti-parallel
Strand 6
H
10 12parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
123 127first strand
Strand 2
H
139 148anti-parallel
Strand 3
H
177 186anti-parallel
Strand 4
H
167 168anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
123 127first strand
Strand 2
H
139 148anti-parallel
Strand 3
H
177 186anti-parallel
Strand 4
H
172 174anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
154 157first strand
Strand 2
H
197 202anti-parallel
Strand 3
H
207 212anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
75 80anti-parallel
Strand 4
L
67 71anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
13 14first strand
Strand 2
L
111 112parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 59first strand
Strand 2
L
50 54anti-parallel
Strand 3
L
38 43anti-parallel
Strand 4
L
89 95anti-parallel
Strand 5
L
102 103anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 59first strand
Strand 2
L
50 54anti-parallel
Strand 3
L
38 43anti-parallel
Strand 4
L
89 95anti-parallel
Strand 5
L
107 109anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
119 123first strand
Strand 2
L
134 144anti-parallel
Strand 3
L
178 187anti-parallel
Strand 4
L
164 168anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
158 159first strand
Strand 2
L
150 155anti-parallel
Strand 3
L
197 202anti-parallel
Strand 4
L
210 214anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
69 74anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
36 41anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
105 106anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
36 41anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
110 114anti-parallel
Strand 6
A
10 12parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
139 148anti-parallel
Strand 3
A
177 186anti-parallel
Strand 4
A
167 168anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
139 148anti-parallel
Strand 3
A
177 186anti-parallel
Strand 4
A
172 174anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
207 212anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
67 71anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
38 43anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
102 103anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
38 43anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
107 109anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
134 144anti-parallel
Strand 3
B
178 187anti-parallel
Strand 4
B
164 168anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
150 155anti-parallel
Strand 3
B
197 202anti-parallel
Strand 4
B
210 214anti-parallel
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