Analysis of interatomic Contacts of Structural Units in PDB entry:
1UB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UB7 entry

There are 8 chains in PDB entry 1UB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 109
A
 PRO 111ALA 322
B
 SER 2GLY 109
B
 PRO 111ALA 322
C
 SER 2GLY 109
C
 PRO 111ALA 322
D
 SER 2GLY 109
D
 PRO 111ALA 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 1UB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed alpha
Helix 2
2
A
28 36Right-handed alpha
Helix 3
3
A
49 65Right-handed alpha
Helix 4
4
A
88 97Right-handed alpha
Helix 5
5
A
111 126Right-handed alpha
Helix 6
6
A
139 143Right-handed 310
Helix 7
7
A
148 153Right-handed alpha
Helix 8
8
A
182 185Right-handed 310
Helix 9
9
A
210 234Right-handed alpha
Helix 10
10
A
236 240Right-handed 310
Helix 11
11
A
249 259Right-handed alpha
Helix 12
12
A
263 267Right-handed 310
Helix 13
13
A
270 275Right-handed alpha
Helix 14
14
A
277 279Right-handed 310
Helix 15
15
A
280 292Right-handed alpha
Helix 16
16
B
18 23Right-handed alpha
Helix 17
17
B
28 37Right-handed alpha
Helix 18
18
B
49 65Right-handed alpha
Helix 19
19
B
88 97Right-handed alpha
Helix 20
20
B
111 126Right-handed alpha
Helix 21
21
B
139 143Right-handed 310
Helix 22
22
B
182 186Right-handed 310
Helix 23
23
B
210 233Right-handed alpha
Helix 24
24
B
236 240Right-handed 310
Helix 25
25
B
249 260Right-handed alpha
Helix 26
26
B
263 267Right-handed 310
Helix 27
27
B
270 275Right-handed alpha
Helix 28
28
B
277 279Right-handed 310
Helix 29
29
B
280 292Right-handed alpha
Helix 30
30
C
18 23Right-handed alpha
Helix 31
31
C
28 36Right-handed alpha
Helix 32
32
C
49 65Right-handed alpha
Helix 33
33
C
88 97Right-handed alpha
Helix 34
34
C
111 126Right-handed alpha
Helix 35
35
C
139 143Right-handed 310
Helix 36
36
C
148 153Right-handed alpha
Helix 37
37
C
182 186Right-handed 310
Helix 38
38
C
210 233Right-handed alpha
Helix 39
39
C
236 238Right-handed 310
Helix 40
40
C
249 259Right-handed alpha
Helix 41
41
C
263 267Right-handed 310
Helix 42
42
C
270 275Right-handed alpha
Helix 43
43
C
277 279Right-handed 310
Helix 44
44
C
280 292Right-handed alpha
Helix 45
45
D
18 23Right-handed alpha
Helix 46
46
D
28 37Right-handed alpha
Helix 47
47
D
49 65Right-handed alpha
Helix 48
48
D
88 97Right-handed alpha
Helix 49
49
D
111 126Right-handed alpha
Helix 50
50
D
139 143Right-handed 310
Helix 51
51
D
148 153Right-handed alpha
Helix 52
52
D
182 186Right-handed 310
Helix 53
53
D
210 233Right-handed alpha
Helix 54
54
D
236 238Right-handed 310
Helix 55
55
D
249 260Right-handed alpha
Helix 56
56
D
263 267Right-handed 310
Helix 57
57
D
270 275Right-handed alpha
Helix 58
58
D
277 279Right-handed 310
Helix 59
59
D
280 292Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 1UB7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
158 165anti-parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
72 78parallel
Strand 5
A
102 107parallel
Strand 6
B
102 107anti-parallel
Strand 7
B
72 78parallel
Strand 8
B
131 138parallel
Strand 9
B
158 165anti-parallel
Strand 10
B
3 10anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
40 43anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
B
188 191anti-parallel
Strand 3
B
208 209anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 180first strand
Strand 2
A
311 318anti-parallel
Strand 3
A
300 307anti-parallel
Strand 4
A
242 245parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
188 191anti-parallel
Strand 3
B
84 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
40 43anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 180first strand
Strand 2
B
311 318anti-parallel
Strand 3
B
300 307anti-parallel
Strand 4
B
242 245parallel
Back to list of sheets
Back to top of page

There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 10first strand
Strand 2
C
158 165anti-parallel
Strand 3
C
131 138anti-parallel
Strand 4
C
72 78parallel
Strand 5
C
102 107parallel
Strand 6
D
102 107anti-parallel
Strand 7
D
72 78parallel
Strand 8
D
131 138parallel
Strand 9
D
158 165anti-parallel
Strand 10
D
3 10anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
40 43anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
D
188 191anti-parallel
Strand 3
D
208 209anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 180first strand
Strand 2
C
311 318anti-parallel
Strand 3
C
300 307anti-parallel
Strand 4
C
240 245parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
188 191anti-parallel
Strand 3
D
84 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
40 43anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 180first strand
Strand 2
D
311 318anti-parallel
Strand 3
D
300 307anti-parallel
Strand 4
D
240 245parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il