Analysis of interatomic Contacts of Structural Units in PDB entry:
1UBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UBJ entry

There are 2 chains in PDB entry 1UBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
S
 LEU 1ASN 267
L
 SER 19HIS 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1UBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
S
18 26Right-handed alpha
Helix 2
2
S
31 38Right-handed alpha
Helix 3
3
S
52 65Right-handed alpha
Helix 4
4
S
81 85Right-handed 310
Helix 5
5
S
94 102Right-handed alpha
Helix 6
6
S
103 105Right-handed 310
Helix 7
7
S
112 118Right-handed alpha
Helix 8
8
S
119 123Right-handed 310
Helix 9
9
S
132 137Right-handed alpha
Helix 10
10
S
138 141Right-handed 310
Helix 11
11
S
153 168Right-handed alpha
Helix 12
12
S
179 184Right-handed alpha
Helix 13
13
S
187 191Right-handed 310
Helix 14
14
S
193 200Right-handed alpha
Helix 15
15
S
208 213Right-handed alpha
Helix 16
16
S
217 221Right-handed 310
Helix 17
17
S
223 227Right-handed 310
Helix 18
18
S
230 235Right-handed alpha
Helix 19
19
S
242 246Right-handed 310
Helix 20
20
S
256 261Right-handed alpha
Helix 21
21
L
60 66Right-handed alpha
Helix 22
22
L
69 71Right-handed 310
Helix 23
23
L
72 79Right-handed alpha
Helix 24
24
L
86 101Right-handed alpha
Helix 25
25
L
105 131Right-handed alpha
Helix 26
26
L
132 136Right-handed 310
Helix 27
27
L
139 145Right-handed 310
Helix 28
28
L
146 158Right-handed alpha
Helix 29
29
L
163 180Right-handed alpha
Helix 30
30
L
183 187Right-handed 310
Helix 31
31
L
201 231Right-handed alpha
Helix 32
32
L
246 250Right-handed 310
Helix 33
33
L
251 272Right-handed alpha
Helix 34
34
L
272 284Right-handed alpha
Helix 35
35
L
285 290Right-handed 310
Helix 36
36
L
308 310Right-handed 310
Helix 37
37
L
323 327Right-handed 310
Helix 38
38
L
331 333Right-handed 310
Helix 39
39
L
351 355Right-handed 310
Helix 40
40
L
365 369Right-handed 310
Helix 41
41
L
386 397Right-handed alpha
Helix 42
42
L
399 414Right-handed alpha
Helix 43
43
L
416 421Right-handed 310
Helix 44
44
L
422 454Right-handed alpha
Helix 45
45
L
500 507Right-handed alpha
Helix 46
46
L
516 523Right-handed alpha
Helix 47
47
L
533 543Right-handed alpha
Helix 48
48
L
546 552Right-handed alpha
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There are 9 sheets in PDB entry 1UBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
41 44first strand
Strand 2
S
8 13parallel
Strand 3
S
71 75parallel
Strand 4
S
107 111parallel
Strand 5
S
145 147parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
78 79first strand
Strand 2
S
130 131anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
88 89first strand
Strand 2
S
92 93anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 27first strand
Strand 2
L
37 44anti-parallel
Strand 3
L
47 55anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
239 240first strand
Strand 2
L
243 244anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
296 298first strand
Strand 2
L
317 319anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
301 303first strand
Strand 2
L
312 314anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
335 338first strand
Strand 2
L
375 378anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
469 477first strand
Strand 2
L
480 489anti-parallel
Strand 3
L
492 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il