Analysis of interatomic Contacts of Structural Units in PDB entry:
1UBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UBN entry

There are 2 chains in PDB entry 1UBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 220
A
 MET 222GLN 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1UBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed alpha
Helix 2
2
A
13 18Right-handed alpha
Helix 3
3
A
64 73Right-handed alpha
Helix 4
4
A
104 116Right-handed alpha
Helix 5
5
A
133 144Right-handed alpha
Helix 6
6
A
220 237Right-handed alpha
Helix 7
7
A
243 252Right-handed alpha
Helix 8
8
A
260 263Right-handed alpha
Helix 9
9
A
270 273Right-handed alpha
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There are 2 sheets in PDB entry 1UBN. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
175 180parallel
Strand 3
A
148 152parallel
Strand 4
A
121 124parallel
Strand 5
A
27 32parallel
Strand 6
A
89 94parallel
Strand 7
A
46 49parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
213 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il