Analysis of interatomic Contacts of Structural Units in PDB entry:
1UBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UBP entry

There are 4 chains in PDB entry 1UBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2SER 100
B
 ASN 5GLU 126
C
 MET 1LEU 219
C
 ILE 221PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1UBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 25Right-handed alpha
Helix 2
2
A
32 49Right-handed alpha
Helix 3
3
A
53 62Right-handed alpha
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
73 76Right-handed alpha
Helix 6
6
B
48 50Right-handed 310
Helix 7
7
B
59 62Right-handed 310
Helix 8
8
B
110 120Right-handed alpha
Helix 9
9
C
5 12Right-handed alpha
Helix 10
10
C
143 152Right-handed 310
Helix 11
11
C
166 170Right-handed alpha
Helix 12
12
C
176 189Right-handed alpha
Helix 13
13
C
205 214Right-handed alpha
Helix 14
14
C
223 225Right-handed 310
Helix 15
15
C
229 242Right-handed alpha
Helix 16
16
C
259 266Right-handed alpha
Helix 17
17
C
287 292Right-handed 310
Helix 18
18
C
311 322Right-handed alpha
Helix 19
19
C
330 339Right-handed alpha
Helix 20
20
C
342 353Right-handed alpha
Helix 21
21
C
373 388Right-handed alpha
Helix 22
22
C
400 410Right-handed alpha
Helix 23
23
C
412 418Right-handed alpha
Helix 24
24
C
440 442Right-handed 310
Helix 25
25
C
480 482Right-handed 310
Helix 26
26
C
484 489Right-handed 310
Helix 27
27
C
497 501Right-handed alpha
Helix 28
28
C
504 508Right-handed alpha
Helix 29
29
C
525 527Right-handed 310
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There are 11 sheets in PDB entry 1UBP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 86first strand
Strand 2
A
89 96anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 33first strand
Strand 2
B
82 89anti-parallel
Strand 3
B
65 67anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
74 77anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
28 30anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 123first strand
Strand 2
C
69 72parallel
Strand 3
C
86 90anti-parallel
Strand 4
C
93 98anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 78first strand
Strand 2
C
81 85anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
435 439anti-parallel
Strand 3
C
449 452anti-parallel
Strand 4
C
455 461anti-parallel
Strand 5
C
475 478anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 196first strand
Strand 2
C
154 159parallel
Strand 3
C
133 135parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 273first strand
Strand 2
C
296 298parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
492 496first strand
Strand 2
C
513 517parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
537 539first strand
Strand 2
C
546 548anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il