Analysis of interatomic Contacts of Structural Units in PDB entry:
1UBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UBX entry

There is 1 chain in PDB entry 1UBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20LYS 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1UBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 41Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
73 85Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
93 121Right-handed alpha
Helix 6
6
A
139 161Right-handed 310
Helix 7
7
A
167 191Right-handed alpha
Helix 8
8
A
204 214Right-handed alpha
Helix 9
9
A
216 219Right-handed alpha
Helix 10
10
A
221 231Right-handed alpha
Helix 11
11
A
236 259Right-handed alpha
Helix 12
12
A
283 290Right-handed alpha
Helix 13
13
A
294 303Right-handed alpha
Helix 14
14
A
312 322Right-handed alpha
Helix 15
15
A
324 345Right-handed alpha
Helix 16
16
A
352 362Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1UBX.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
129 130anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il