Analysis of interatomic Contacts of Structural Units in PDB entry:
1UC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UC1 entry

There is 1 chain in PDB entry 1UC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1UC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 47Right-handed alpha
Helix 2
2
A
62 76Right-handed alpha
Helix 3
3
A
84 93Right-handed alpha
Helix 4
4
A
130 149Right-handed alpha
Helix 5
5
A
215 229Right-handed alpha
Helix 6
6
A
255 266Right-handed alpha
Helix 7
7
A
324 326Right-handed 310
Helix 8
8
A
371 374Right-handed 310
Helix 9
9
A
420 424Right-handed alpha
Helix 10
10
A
465 469Right-handed alpha
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There are 7 sheets in PDB entry 1UC1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
117 122parallel
Strand 3
A
163 168parallel
Strand 4
A
199 202parallel
Strand 5
A
186 188anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
300 303anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
318 322anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
353 358anti-parallel
Strand 4
A
361 362anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
353 358anti-parallel
Strand 4
A
368 369anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
401 406anti-parallel
Strand 4
A
411 412anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
401 406anti-parallel
Strand 4
A
418 419anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
442 445anti-parallel
Strand 3
A
448 450anti-parallel
Strand 4
A
462 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il