Analysis of interatomic Contacts of Structural Units in PDB entry:
1UDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UDX entry

There is 1 chain in PDB entry 1UDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1UDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
124 129Right-handed 310
Helix 2
2
A
165 168Right-handed 310
Helix 3
3
A
169 178Right-handed alpha
Helix 4
4
A
218 222Right-handed 310
Helix 5
5
A
226 234Right-handed alpha
Helix 6
6
A
248 264Right-handed alpha
Helix 7
7
A
264 270Right-handed alpha
Helix 8
8
A
283 296Right-handed alpha
Helix 9
9
A
311 325Right-handed alpha
Helix 10
10
A
358 366Right-handed alpha
Helix 11
11
A
372 374Right-handed 310
Helix 12
12
A
375 386Right-handed alpha
Helix 13
13
A
387 394Right-handed alpha
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There are 5 sheets in PDB entry 1UDX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
5 11parallel
Strand 3
A
147 154anti-parallel
Strand 4
A
92 96anti-parallel
Strand 5
A
102 106anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
44 48parallel
Strand 3
A
112 116anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
368 370anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
160 163parallel
Strand 5
A
238 244parallel
Strand 6
A
272 277parallel
Strand 7
A
301 303parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
353 357anti-parallel
Strand 3
A
402 405parallel
Strand 4
A
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il