Analysis of interatomic Contacts of Structural Units in PDB entry:
1UE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UE6 entry

There are 4 chains in PDB entry 1UE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 123
B
 GLY 3GLY 125
C
 GLY 3SER 121
D
 GLY 3LYS 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 1UE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 71Right-handed alpha
Helix 2
2
B
61 71Right-handed alpha
Helix 3
3
C
61 70Right-handed alpha
Helix 4
4
D
61 71Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1UE6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
27 35anti-parallel
Strand 3
B
4 13anti-parallel
Strand 4
A
5 12anti-parallel
Strand 5
A
76 84anti-parallel
Strand 6
A
100 108anti-parallel
Strand 7
A
53 60parallel
Strand 8
A
28 35anti-parallel
Strand 9
A
5 12anti-parallel
Strand 10
B
4 13anti-parallel
Strand 11
B
76 86anti-parallel
Strand 12
B
98 108anti-parallel
Strand 13
B
53 60parallel
Strand 14
B
27 35anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
28 35anti-parallel
Strand 3
C
5 12anti-parallel
Strand 4
D
5 12anti-parallel
Strand 5
D
76 87anti-parallel
Strand 6
D
97 108anti-parallel
Strand 7
D
54 60parallel
Strand 8
D
28 34anti-parallel
Strand 9
D
18 20anti-parallel
Strand 10
D
28 34anti-parallel
Strand 11
D
5 12anti-parallel
Strand 12
C
5 12anti-parallel
Strand 13
C
76 85anti-parallel
Strand 14
C
99 108anti-parallel
Strand 15
C
53 60parallel
Strand 16
C
28 35anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 89first strand
Strand 2
C
95 96anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il