Analysis of interatomic Contacts of Structural Units in PDB entry:
1UEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UEB entry

There are 2 chains in PDB entry 1UEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 184
B
 MET 201ALA 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1UEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 7Right-handed 310
Helix 2
2
A
96 98Right-handed 310
Helix 3
3
A
100 104Right-handed 310
Helix 4
4
B
205 207Right-handed 310
Helix 5
5
B
294 298Right-handed 310
Helix 6
6
B
300 304Right-handed 310
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There are 6 sheets in PDB entry 1UEB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
59 62anti-parallel
Strand 3
A
12 15anti-parallel
Strand 4
A
18 30anti-parallel
Strand 5
B
218 230anti-parallel
Strand 6
B
212 215anti-parallel
Strand 7
B
259 262anti-parallel
Strand 8
B
202 203anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 55first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
18 30anti-parallel
Strand 4
B
218 230anti-parallel
Strand 5
B
236 243anti-parallel
Strand 6
B
249 255anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
65 76anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
A
118 123anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
127 134anti-parallel
Strand 4
A
170 174anti-parallel
Strand 5
A
179 183anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
279 284anti-parallel
Strand 3
B
266 276anti-parallel
Strand 4
B
309 315anti-parallel
Strand 5
B
318 323anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 362first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
327 334anti-parallel
Strand 4
B
370 374anti-parallel
Strand 5
B
379 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il