Analysis of interatomic Contacts of Structural Units in PDB entry:
1UF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1UF3 entry

There are 8 chains in PDB entry 1UF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ARG 228
B	ARG 3	ARG 228
C	THR 4	ARG 228
D	MSE 1	ARG 228
E	MSE 1	ARG 228
F	MSE 1	ARG 228
G	MSE 1	ARG 228
H	MSE 1	ARG 228

There are 63 helices in PDB entry 1UF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	26	Right-handed alpha
Helix 2	2	A	26	32	Right-handed alpha
Helix 3	3	A	48	60	Right-handed alpha
Helix 4	4	A	61	63	Right-handed 310
Helix 5	5	A	76	91	Right-handed alpha
Helix 6	6	A	133	141	Right-handed alpha
Helix 7	7	A	142	146	Right-handed 310
Helix 8	8	A	169	180	Right-handed alpha
Helix 9	9	A	206	209	Right-handed 310
Helix 10	10	B	17	32	Right-handed alpha
Helix 11	11	B	48	61	Right-handed alpha
Helix 12	12	B	76	91	Right-handed alpha
Helix 13	13	B	133	141	Right-handed alpha
Helix 14	14	B	142	147	Right-handed 310
Helix 15	15	B	169	180	Right-handed alpha
Helix 16	16	B	206	209	Right-handed 310
Helix 17	17	C	17	32	Right-handed alpha
Helix 18	18	C	48	61	Right-handed alpha
Helix 19	19	C	76	91	Right-handed alpha
Helix 20	20	C	133	141	Right-handed alpha
Helix 21	21	C	142	147	Right-handed 310
Helix 22	22	C	169	180	Right-handed alpha
Helix 23	23	C	206	209	Right-handed 310
Helix 24	24	D	17	32	Right-handed alpha
Helix 25	25	D	48	60	Right-handed alpha
Helix 26	26	D	61	63	Right-handed 310
Helix 27	27	D	76	91	Right-handed alpha
Helix 28	28	D	133	142	Right-handed alpha
Helix 29	29	D	143	146	Right-handed 310
Helix 30	30	D	169	180	Right-handed alpha
Helix 31	31	D	206	209	Right-handed 310
Helix 32	32	E	17	32	Right-handed alpha
Helix 33	33	E	48	61	Right-handed alpha
Helix 34	34	E	76	91	Right-handed alpha
Helix 35	35	E	133	142	Right-handed alpha
Helix 36	36	E	143	146	Right-handed 310
Helix 37	37	E	169	180	Right-handed alpha
Helix 38	38	E	206	209	Right-handed 310
Helix 39	39	F	17	28	Right-handed alpha
Helix 40	40	F	29	32	Right-handed 310
Helix 41	41	F	48	60	Right-handed alpha
Helix 42	42	F	61	63	Right-handed 310
Helix 43	43	F	76	91	Right-handed alpha
Helix 44	44	F	133	141	Right-handed alpha
Helix 45	45	F	142	147	Right-handed 310
Helix 46	46	F	169	180	Right-handed alpha
Helix 47	47	F	206	209	Right-handed 310
Helix 48	48	G	17	32	Right-handed alpha
Helix 49	49	G	48	60	Right-handed alpha
Helix 50	50	G	61	63	Right-handed 310
Helix 51	51	G	76	91	Right-handed alpha
Helix 52	52	G	133	141	Right-handed alpha
Helix 53	53	G	142	147	Right-handed 310
Helix 54	54	G	169	180	Right-handed alpha
Helix 55	55	G	206	209	Right-handed 310
Helix 56	56	H	17	32	Right-handed alpha
Helix 57	57	H	48	60	Right-handed alpha
Helix 58	58	H	61	63	Right-handed 310
Helix 59	59	H	76	91	Right-handed alpha
Helix 60	60	H	133	141	Right-handed alpha
Helix 61	61	H	142	146	Right-handed 310
Helix 62	62	H	169	180	Right-handed alpha
Helix 63	63	H	206	209	Right-handed 310

There are 24 sheets in PDB entry 1UF3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	66	69	parallel
Strand 3	A	35	39	parallel
Strand 4	A	7	12	parallel
Strand 5	A	211	216	anti-parallel
Strand 6	A	221	226	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	108	113	anti-parallel
Strand 3	A	151	155	parallel
Strand 4	A	183	186	parallel
Strand 5	A	199	203	parallel
Strand 6	A	192	196	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	130	132	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	66	69	parallel
Strand 3	B	35	39	parallel
Strand 4	B	7	12	parallel
Strand 5	B	211	216	anti-parallel
Strand 6	B	221	226	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	151	155	parallel
Strand 4	B	183	186	parallel
Strand 5	B	199	203	parallel
Strand 6	B	192	196	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	130	132	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	66	69	parallel
Strand 3	C	35	39	parallel
Strand 4	C	7	12	parallel
Strand 5	C	211	216	anti-parallel
Strand 6	C	221	226	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	108	113	anti-parallel
Strand 3	C	151	155	parallel
Strand 4	C	183	185	parallel
Strand 5	C	199	203	parallel
Strand 6	C	192	196	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	130	132	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	66	69	parallel
Strand 3	D	35	39	parallel
Strand 4	D	7	12	parallel
Strand 5	D	211	216	anti-parallel
Strand 6	D	221	226	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	104	first strand
Strand 2	D	108	113	anti-parallel
Strand 3	D	151	155	parallel
Strand 4	D	183	185	parallel
Strand 5	D	199	203	parallel
Strand 6	D	192	196	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	130	132	parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	66	69	parallel
Strand 3	E	35	39	parallel
Strand 4	E	7	12	parallel
Strand 5	E	211	216	anti-parallel
Strand 6	E	221	226	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	104	first strand
Strand 2	E	108	113	anti-parallel
Strand 3	E	151	155	parallel
Strand 4	E	183	185	parallel
Strand 5	E	199	203	parallel
Strand 6	E	192	196	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	130	132	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	66	69	parallel
Strand 3	F	35	39	parallel
Strand 4	F	7	12	parallel
Strand 5	F	211	216	anti-parallel
Strand 6	F	221	226	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	104	first strand
Strand 2	F	108	113	anti-parallel
Strand 3	F	151	155	parallel
Strand 4	F	183	185	parallel
Strand 5	F	199	203	parallel
Strand 6	F	192	196	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	130	132	parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	96	first strand
Strand 2	G	66	69	parallel
Strand 3	G	35	39	parallel
Strand 4	G	7	12	parallel
Strand 5	G	211	216	anti-parallel
Strand 6	G	221	226	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	104	first strand
Strand 2	G	108	113	anti-parallel
Strand 3	G	151	155	parallel
Strand 4	G	183	185	parallel
Strand 5	G	199	203	parallel
Strand 6	G	192	196	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	118	first strand
Strand 2	G	130	132	parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	96	first strand
Strand 2	H	66	69	parallel
Strand 3	H	35	39	parallel
Strand 4	H	7	12	parallel
Strand 5	H	211	216	anti-parallel
Strand 6	H	221	226	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	104	first strand
Strand 2	H	108	113	anti-parallel
Strand 3	H	151	155	parallel
Strand 4	H	183	186	parallel
Strand 5	H	199	203	parallel
Strand 6	H	192	196	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	130	132	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1UF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
1UF3