Analysis of interatomic Contacts of Structural Units in PDB entry:
1UFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UFR entry

There are 4 chains in PDB entry 1UFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 178
B
 MSE 1ARG 178
C
 ARG 2ARG 178
D
 ARG 2ARG 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1UFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
42 59Right-handed alpha
Helix 3
3
A
109 123Right-handed alpha
Helix 4
4
A
164 169Right-handed alpha
Helix 5
5
B
10 29Right-handed alpha
Helix 6
6
B
42 59Right-handed alpha
Helix 7
7
B
109 123Right-handed alpha
Helix 8
8
B
164 169Right-handed alpha
Helix 9
9
C
10 29Right-handed alpha
Helix 10
10
C
42 59Right-handed alpha
Helix 11
11
C
109 121Right-handed alpha
Helix 12
12
C
164 169Right-handed alpha
Helix 13
13
D
10 29Right-handed alpha
Helix 14
14
D
42 59Right-handed alpha
Helix 15
15
D
109 123Right-handed alpha
Helix 16
16
D
164 169Right-handed alpha
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There are 6 sheets in PDB entry 1UFR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
159 163anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
127 135parallel
Strand 3
A
98 106parallel
Strand 4
A
34 39parallel
Strand 5
A
64 70parallel
Strand 6
A
84 90anti-parallel
Strand 7
C
84 90anti-parallel
Strand 8
C
64 70anti-parallel
Strand 9
C
34 39parallel
Strand 10
C
98 106parallel
Strand 11
C
127 135parallel
Strand 12
C
147 151parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
172 177anti-parallel
Strand 3
B
158 163anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
127 135parallel
Strand 3
B
98 106parallel
Strand 4
B
34 39parallel
Strand 5
B
64 70parallel
Strand 6
B
84 90anti-parallel
Strand 7
D
84 90anti-parallel
Strand 8
D
64 70anti-parallel
Strand 9
D
34 38parallel
Strand 10
D
98 106parallel
Strand 11
D
127 135parallel
Strand 12
D
147 151parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 9first strand
Strand 2
C
172 176anti-parallel
Strand 3
C
159 163anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 9first strand
Strand 2
D
172 176anti-parallel
Strand 3
D
159 163anti-parallel
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