Analysis of interatomic Contacts of Structural Units in PDB entry:
1UHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1UHV entry

There are 4 chains in PDB entry 1UHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 500
B	MET 1	TYR 500
C	MET 1	TYR 500
D	MET 1	TYR 500

There are 74 helices in PDB entry 1UHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	19	Right-handed 310
Helix 2	2	A	26	31	Right-handed 310
Helix 3	3	A	32	44	Right-handed alpha
Helix 4	4	A	79	93	Right-handed alpha
Helix 5	5	A	126	146	Right-handed alpha
Helix 6	6	A	146	151	Right-handed alpha
Helix 7	7	A	167	170	Right-handed 310
Helix 8	8	A	171	190	Right-handed alpha
Helix 9	9	A	205	219	Right-handed alpha
Helix 10	10	A	248	265	Right-handed alpha
Helix 11	11	A	286	290	Right-handed 310
Helix 12	12	A	291	305	Right-handed alpha
Helix 13	13	A	306	308	Right-handed 310
Helix 14	14	A	345	355	Right-handed alpha
Helix 15	15	A	421	429	Right-handed alpha
Helix 16	16	A	436	447	Right-handed alpha
Helix 17	17	A	485	489	Right-handed 310
Helix 18	18	A	493	497	Right-handed 310
Helix 19	19	B	16	19	Right-handed 310
Helix 20	20	B	26	31	Right-handed 310
Helix 21	21	B	32	44	Right-handed alpha
Helix 22	22	B	79	93	Right-handed alpha
Helix 23	23	B	104	108	Right-handed 310
Helix 24	24	B	126	146	Right-handed alpha
Helix 25	25	B	146	151	Right-handed alpha
Helix 26	26	B	167	170	Right-handed 310
Helix 27	27	B	171	190	Right-handed alpha
Helix 28	28	B	205	218	Right-handed alpha
Helix 29	29	B	248	265	Right-handed alpha
Helix 30	30	B	286	290	Right-handed 310
Helix 31	31	B	291	305	Right-handed alpha
Helix 32	32	B	306	308	Right-handed 310
Helix 33	33	B	345	355	Right-handed alpha
Helix 34	34	B	421	429	Right-handed alpha
Helix 35	35	B	436	447	Right-handed alpha
Helix 36	36	B	485	489	Right-handed 310
Helix 37	37	B	493	497	Right-handed 310
Helix 38	38	C	16	19	Right-handed 310
Helix 39	39	C	26	31	Right-handed 310
Helix 40	40	C	32	46	Right-handed alpha
Helix 41	41	C	79	93	Right-handed alpha
Helix 42	42	C	104	108	Right-handed 310
Helix 43	43	C	126	146	Right-handed alpha
Helix 44	44	C	146	151	Right-handed alpha
Helix 45	45	C	167	170	Right-handed 310
Helix 46	46	C	171	190	Right-handed alpha
Helix 47	47	C	205	218	Right-handed alpha
Helix 48	48	C	248	265	Right-handed alpha
Helix 49	49	C	286	290	Right-handed 310
Helix 50	50	C	291	305	Right-handed alpha
Helix 51	51	C	306	308	Right-handed 310
Helix 52	52	C	345	355	Right-handed alpha
Helix 53	53	C	421	429	Right-handed alpha
Helix 54	54	C	436	447	Right-handed alpha
Helix 55	55	C	485	489	Right-handed 310
Helix 56	56	C	493	497	Right-handed 310
Helix 57	57	D	16	19	Right-handed 310
Helix 58	58	D	26	31	Right-handed 310
Helix 59	59	D	32	44	Right-handed alpha
Helix 60	60	D	79	93	Right-handed alpha
Helix 61	61	D	104	108	Right-handed 310
Helix 62	62	D	126	146	Right-handed alpha
Helix 63	63	D	146	151	Right-handed alpha
Helix 64	64	D	167	170	Right-handed 310
Helix 65	65	D	171	190	Right-handed alpha
Helix 66	66	D	205	217	Right-handed alpha
Helix 67	67	D	248	265	Right-handed alpha
Helix 68	68	D	286	290	Right-handed 310
Helix 69	69	D	291	309	Right-handed alpha
Helix 70	70	D	345	355	Right-handed alpha
Helix 71	71	D	421	429	Right-handed alpha
Helix 72	72	D	436	447	Right-handed alpha
Helix 73	73	D	485	489	Right-handed 310
Helix 74	74	D	493	497	Right-handed 310

There are 28 sheets in PDB entry 1UHV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	395	402	parallel
Strand 3	A	462	469	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	50	52	parallel
Strand 3	A	95	96	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	69	first strand
Strand 2	A	72	77	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	155	157	parallel
Strand 3	A	195	200	parallel
Strand 4	A	224	230	parallel
Strand 5	A	273	279	parallel
Strand 6	A	311	314	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	119	120	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	343	344	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	365	first strand
Strand 2	A	368	372	anti-parallel
Strand 3	A	378	384	anti-parallel
Strand 4	A	473	481	anti-parallel
Strand 5	A	408	415	anti-parallel
Strand 6	A	450	454	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	395	402	parallel
Strand 3	B	462	469	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	50	52	parallel
Strand 3	B	95	96	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	72	77	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	155	157	parallel
Strand 3	B	195	200	parallel
Strand 4	B	224	230	parallel
Strand 5	B	273	279	parallel
Strand 6	B	311	314	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	119	120	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	343	344	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	365	first strand
Strand 2	B	368	372	anti-parallel
Strand 3	B	378	384	anti-parallel
Strand 4	B	473	481	anti-parallel
Strand 5	B	408	415	anti-parallel
Strand 6	B	450	454	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	395	402	parallel
Strand 3	C	462	469	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	360	365	anti-parallel
Strand 3	C	368	372	anti-parallel
Strand 4	C	378	384	anti-parallel
Strand 5	C	473	481	anti-parallel
Strand 6	C	408	415	anti-parallel
Strand 7	C	450	454	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	50	52	parallel
Strand 3	C	95	96	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	73	77	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	155	157	parallel
Strand 3	C	195	200	parallel
Strand 4	C	224	230	parallel
Strand 5	C	273	279	parallel
Strand 6	C	311	314	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	119	120	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	343	344	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	395	402	parallel
Strand 3	D	462	469	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	50	52	parallel
Strand 3	D	95	96	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	69	first strand
Strand 2	D	72	77	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	155	157	parallel
Strand 3	D	195	200	parallel
Strand 4	D	224	230	parallel
Strand 5	D	273	279	parallel
Strand 6	D	311	314	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	119	120	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	343	344	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	365	first strand
Strand 2	D	368	372	anti-parallel
Strand 3	D	378	383	anti-parallel
Strand 4	D	474	481	anti-parallel
Strand 5	D	408	415	anti-parallel
Strand 6	D	450	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1UHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
1UHV